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CAZyme Information: MGYG000003883_02433
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Kosakonia cowanii | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Kosakonia; Kosakonia cowanii | |||||||||||
| CAZyme ID | MGYG000003883_02433 | |||||||||||
| CAZy Family | PL5 | |||||||||||
| CAZyme Description | Alginate lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 873; End: 1949 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL5 | 20 | 332 | 1.3e-133 | 0.9841772151898734 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK00325 | algL | 1.62e-131 | 4 | 356 | 6 | 357 | polysaccharide lyase. |
| cd00244 | AlgLyase | 3.50e-131 | 19 | 353 | 4 | 338 | Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-mannuronate and alpha-L-guluronate, by cleaving the beta-(1,4) glycosidic bond. |
| pfam05426 | Alginate_lyase | 8.38e-50 | 55 | 296 | 1 | 274 | Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AST68704.1 | 2.83e-261 | 1 | 358 | 1 | 358 |
| APZ06486.1 | 1.50e-256 | 1 | 358 | 1 | 358 |
| QAR46335.1 | 1.61e-251 | 1 | 358 | 1 | 358 |
| AZI87697.1 | 1.54e-249 | 1 | 358 | 1 | 358 |
| QNQ20317.1 | 3.71e-225 | 1 | 358 | 1 | 358 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4OZV_A | 3.21e-110 | 20 | 351 | 1 | 331 | CrystalStructure of the periplasmic alginate lyase AlgL [Pseudomonas aeruginosa PAO1] |
| 4OZW_A | 1.05e-108 | 20 | 351 | 1 | 331 | CrystalStructure of the periplasmic alginate lyase AlgL H202A mutant [Pseudomonas aeruginosa PAO1] |
| 7FHZ_A | 1.71e-39 | 42 | 353 | 1 | 299 | ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a] |
| 7FHU_A | 2.01e-39 | 42 | 353 | 1 | 299 | ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHU_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHV_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHV_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHW_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHW_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHX_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHX_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHY_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHY_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FI0_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FI1_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a] |
| 7FI2_A | 5.73e-38 | 42 | 353 | 1 | 299 | ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| O52195 | 1.29e-113 | 11 | 356 | 15 | 361 | Alginate lyase OS=Azotobacter vinelandii OX=354 GN=algL PE=1 SV=1 |
| C1DP89 | 1.29e-113 | 11 | 356 | 15 | 361 | Alginate lyase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) OX=322710 GN=algL PE=3 SV=1 |
| A5W8V4 | 2.07e-113 | 12 | 358 | 17 | 363 | Alginate lyase OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1) OX=351746 GN=algL PE=3 SV=1 |
| B0KGQ9 | 2.93e-113 | 12 | 358 | 17 | 363 | Alginate lyase OS=Pseudomonas putida (strain GB-1) OX=76869 GN=algL PE=3 SV=1 |
| Q88ND1 | 4.73e-113 | 12 | 358 | 21 | 367 | Alginate lyase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=algL PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000269 | 0.999090 | 0.000157 | 0.000178 | 0.000152 | 0.000143 |