CAZyme Information: MGYG000003711_00017

Basic Information

• Species: Stenotrophomonas maltophilia_AQ
• Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia_AQ
• CAZyme ID: MGYG000003711_00017
• CAZy Family: AA10
• CAZyme Description: Chitin-binding protein CbpD

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
391	MGYG000003711_1|CGC1	42230.44	7.8836

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003711	4541486	MAG	Estonia	Europe

• Gene Location: Start: 17505; End: 18680 Strand: +

Full Sequence      

MHLSHRAVLALSVVAGLALSGSALAHGTMSKPLSRVKQCHEGNPENPTNPACAAAKAIGG
AQPFYDWSAIAHGNANGNHRDLVRDGELCSASIPKYRGLDLNRSDWPTTPVRADSRGRYT
FEFLAPAPHATREWKFYVTRDGWQPGSPLRWADLQEFCTLGNVPLSEGGVYKLDCPLPKR
SGQHIIYNTWQRSDSQEAFYTCMDVRFEGGGGVVPPPQWQDAGAVTANGALDVGTTVTLR
VFNANGNDLERVETKLAAGQTSPTQWPLALARKVNASAQHARVGVMKNGVITPVASATDN
RVYLKPGNRFQLETQVPGPGPIDPVDPPGGDFDFVYPAGLGSYKPGETVVKGTDGKLYAC
RPFPEGAWCNINADAYRPGTGFAWRDAWIAY

Enzyme Prediction     

No EC number prediction in MGYG000003711_00017.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
AA10	26	205	8.5e-46	0.9887640449438202
CBM73	342	388	9.8e-19	0.8333333333333334

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd21177	LPMO_AA10	6.38e-69	26	205	1	179	lytic polysaccharide monooxygenase (LPMO) auxiliary activity family 10 (AA10). AA10 proteins are copper-dependent lytic polysaccharide monooxygenases (LPMOs), which may act on chitin or cellulose. The family used to be called CBM33. Activities in this family include lytic cellulose monooxygenase (C1-hydroxylating) (EC 1.14.99.54), lytic cellulose monooxygenase (C4-dehydrogenating) (EC 1.14.99.56), lytic chitin monooxygenase (EC 1.14.99.53), and lytic xylan monooxygenase/xylan oxidase (glycosidic bond-cleaving) (EC 1.14.99.-). Also included are viral chitin-binding glycoproteins such as fusolin and spheroidin-like proteins.
PRK13211	PRK13211	1.08e-65	14	389	12	475	N-acetylglucosamine-binding protein GbpA.
COG3397	COG3397	2.53e-65	8	307	12	305	Predicted carbohydrate-binding protein, contains CBM5 and CBM33 domains [General function prediction only].
pfam03067	LPMO_10	5.12e-61	26	205	1	186	Lytic polysaccharide mono-oxygenase, cellulose-degrading. This domain is found associated with a wide variety of cellulose binding domains. This is a family of two very closely related proteins that together act as both a C1- and a C4-oxidising lytic polysaccharide mono-oxygenase, degrading cellulose. This domain is also found in baculoviral spheroidins and spindolins, protein of unknown function.
pfam18416	GbpA_2	3.19e-26	219	315	1	102	N-acetylglucosamine binding protein domain 2. This domain can be found in N-acetylglucosamine binding protein (GbpA) from Vibrio cholerae, a bacterial pathogen that colonizes the chitinous exoskeleton of zooplankton as well as the human gastrointestinal tract. GbpA binds to GlcNAc oligosaccharides. Structural comparison show that there are distant structural similarities between domain 2 of GbpA and the beta-domain of the flagellin protein p5. It is suggested that this domain interacts with the bacterial surface, and functions to project an alginate binding domain of the protein from the cell surface.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QGL78159.1	1.10e-302	1	391	1	391
ACF53577.1	1.10e-302	1	391	1	391
BBO53563.1	1.10e-302	1	391	1	391
QGM07443.1	9.02e-302	1	391	1	391
QBL42696.1	2.13e-300	1	391	1	391

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6IF7_A	1.22e-56	26	207	1	182	CrystalStructure of AA10 Lytic Polysaccharide Monooxygenase from Tectaria macrodonta [Tectaria macrodonta]
5FJQ_A	8.76e-40	26	207	1	179	Structuraland functional analysis of a lytic polysaccharide monooxygenase important for efficient utilization of chitin in Cellvibrio japonicus [Cellvibrio japonicus],5FJQ_B Structural and functional analysis of a lytic polysaccharide monooxygenase important for efficient utilization of chitin in Cellvibrio japonicus [Cellvibrio japonicus],5FJQ_C Structural and functional analysis of a lytic polysaccharide monooxygenase important for efficient utilization of chitin in Cellvibrio japonicus [Cellvibrio japonicus]
2XWX_A	5.27e-34	84	321	55	293	Vibriocholerae colonization factor GbpA crystal structure [Vibrio cholerae],2XWX_B Vibrio cholerae colonization factor GbpA crystal structure [Vibrio cholerae]
4OY7_A	7.42e-31	26	210	1	196	Structureof cellulose active LPMO CelS2 (ScLPMO10C) in complex with Copper. [Streptomyces coelicolor A3(2)],4OY7_B Structure of cellulose active LPMO CelS2 (ScLPMO10C) in complex with Copper. [Streptomyces coelicolor A3(2)],4OY7_C Structure of cellulose active LPMO CelS2 (ScLPMO10C) in complex with Copper. [Streptomyces coelicolor A3(2)],4OY7_D Structure of cellulose active LPMO CelS2 (ScLPMO10C) in complex with Copper. [Streptomyces coelicolor A3(2)],4OY7_E Structure of cellulose active LPMO CelS2 (ScLPMO10C) in complex with Copper. [Streptomyces coelicolor A3(2)],4OY7_F Structure of cellulose active LPMO CelS2 (ScLPMO10C) in complex with Copper. [Streptomyces coelicolor A3(2)],4OY7_G Structure of cellulose active LPMO CelS2 (ScLPMO10C) in complex with Copper. [Streptomyces coelicolor A3(2)],4OY7_H Structure of cellulose active LPMO CelS2 (ScLPMO10C) in complex with Copper. [Streptomyces coelicolor A3(2)]
5OPF_A	6.32e-22	26	207	1	193	Structureof LPMO10B from from Micromonospora aurantiaca [Micromonospora aurantiaca ATCC 27029]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q02I11	4.94e-118	11	388	11	386	Chitin-binding protein CbpD OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=cpbD PE=1 SV=1
Q9I589	7.00e-118	11	388	11	386	Chitin-binding protein CbpD OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=cbpD PE=1 SV=1
Q9KLD5	5.86e-40	84	388	78	482	GlcNAc-binding protein A OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=gbpA PE=1 SV=1
A5F0H4	8.12e-40	84	388	78	482	GlcNAc-binding protein A OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) OX=345073 GN=gbpA PE=3 SV=1
C3LW75	8.12e-40	84	388	78	482	GlcNAc-binding protein A OS=Vibrio cholerae serotype O1 (strain M66-2) OX=579112 GN=gbpA PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000442	0.998690	0.000191	0.000305	0.000187	0.000157

TMHMM  Annotations     

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