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CAZyme Information: MGYG000003693_00880

You are here: Home > Sequence: MGYG000003693_00880

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phocaeicola plebeius_A
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola plebeius_A
CAZyme ID MGYG000003693_00880
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
464 MGYG000003693_6|CGC2 52919.08 5.1401
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003693 3967780 Isolate China Asia
Gene Location Start: 69376;  End: 70770  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003693_00880.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 184 451 1.4e-41 0.7723076923076924

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.54e-08 212 464 239 449
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 1.93e-06 214 449 88 311
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03010 PLN03010 4.41e-06 200 445 148 381
polygalacturonase
pfam13229 Beta_helix 0.001 191 288 26 122
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam05048 NosD 0.002 168 289 2 125
Periplasmic copper-binding protein (NosD). NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ALJ62050.1 2.85e-254 14 464 11 461
QUT92200.1 2.33e-253 14 464 11 461
QQY39815.1 2.22e-251 18 464 15 461
ABR37851.1 2.22e-251 18 464 15 461
QJR77942.1 7.09e-251 1 464 1 464

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000232 0.999181 0.000156 0.000139 0.000141 0.000134

TMHMM  Annotations      download full data without filtering help

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