CAZyme Information: MGYG000003400_02199

Basic Information

• Species: Stenotrophomonas sp003028475
• Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas sp003028475
• CAZyme ID: MGYG000003400_02199
• CAZy Family: CBM13
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
579		58105.58	6.0252

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003400	4365701	MAG	United States	North America

• Gene Location: Start: 49122; End: 50861 Strand: +

Full Sequence      

MSQVTQPRVRRVWVVLGASVLSSLLLATPALAGDVQLSGLQSAPTHQRFIVKYRDGSAPV
ANTTALASSLKSAAAGLASSQGRALGLQEVRKLAVGPTLVRTDRPLDQAESELLMRKLAA
DPNVEYVEVDQIMRATLTPNDTRFSEQWGFGTSNAGINIQPAWDKSTGTGVVVAVIDTGI
TNHPDLNANILPGYDFISDAAMARDGGGRDNNPNDEGDWYGANECGSGIPASNSSWHGTH
VAGTVAAVTNNASGVAGTAFNAKVVPVRVLGKCGGYTSDIADAIVWASGGTVSGVPANAN
PAEVINLSLGGGGSCSSTYQNAINGAVGRGTTVVVAAGNSNANVSSSVPANCPNVIAVAA
TTSAGARASFSNYGAGIDISGPGQSILSTLNTGTTTPGSASYASYNGTSMAAPHVAGVVA
LMQSVAPSPLSPAQVESIIKSTARPLPGACSGGCGAGIIDANAAVAAAINGGGTNPGGNV
LQNNVPVTGLGASTGAELNYTVAVPAGSTQLRVAISGGSGDADLYVRQGSAPTDTTYTCR
PYLSGNSETCTINSPAAGTWYVRVKAYSTFSGVTLNAQY

Enzyme Prediction     

No EC number prediction in MGYG000003400_02199.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd07496	Peptidases_S8_13	7.49e-122	170	442	1	285	Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
cd07484	Peptidases_S8_Thermitase_like	1.08e-74	138	446	1	259	Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.
cd07473	Peptidases_S8_Subtilisin_like	1.51e-61	170	444	3	259	Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
cd07477	Peptidases_S8_Subtilisin_subset	9.74e-59	170	442	1	229	Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
pfam00082	Peptidase_S8	1.35e-56	168	447	1	276	Subtilase family. Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ALN86161.1	5.35e-161	25	471	29	480
ATE72186.1	7.56e-161	25	471	29	480
QZY84418.1	4.37e-135	42	439	63	450
CAG23448.1	1.01e-119	30	465	22	464
AIY26234.1	4.86e-117	30	465	22	463

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5YL7_A	5.18e-123	138	461	2	331	Proteasesfrom Pseudoalteromonas arctica PAMC 21717 (Pro21717) [Pseudoalteromonas arctica]
3LPA_A	1.71e-104	139	465	2	335	Crystalstructure of a subtilisin-like protease [Dichelobacter nodosus VCS1703A]
3LPC_A	3.40e-104	139	465	2	335	Crystalstructure of a subtilisin-like protease [Dichelobacter nodosus]
3LPD_A	5.19e-103	139	465	2	335	Crystalstructure of a subtilisin-like protease [Dichelobacter nodosus VCS1703A]
3TI7_A	5.62e-103	139	469	3	340	Crystalstructure of the basic protease BprV from the ovine footrot pathogen, Dichelobacter nodosus [Dichelobacter nodosus VCS1703A]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P23314	7.64e-284	15	579	15	580	Extracellular protease OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=XCC0851 PE=3 SV=1
P42779	2.27e-112	48	564	48	585	Extracellular basic protease OS=Dichelobacter nodosus OX=870 GN=bprV PE=1 SV=1
P42780	5.58e-111	48	471	45	474	Extracellular subtilisin-like protease OS=Dichelobacter nodosus OX=870 PE=3 SV=1
P16588	1.90e-56	115	579	114	534	Alkaline serine exoprotease A OS=Vibrio alginolyticus OX=663 GN=proA PE=3 SV=1
Q45670	6.22e-43	112	424	97	362	Thermophilic serine proteinase OS=Bacillus sp. (strain AK1) OX=268807 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.002362	0.996089	0.000562	0.000497	0.000253	0.000205

TMHMM  Annotations     

start	end
12	31