logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000003355_02409

You are here: Home > Sequence: MGYG000003355_02409

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lachnoclostridium phytofermentans_A
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium; Lachnoclostridium phytofermentans_A
CAZyme ID MGYG000003355_02409
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1227 130704.91 4.6104
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003355 5194070 MAG China Asia
Gene Location Start: 405;  End: 4088  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.2

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL9 636 1043 1.5e-128 0.984
PL1 233 403 3.6e-44 0.8366336633663366
CBM77 1119 1217 7.4e-35 0.9514563106796117

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 5.10e-71 100 511 1 340
Pectate lyase [Carbohydrate transport and metabolism].
pfam18283 CBM77 1.54e-31 1118 1223 3 108
Carbohydrate binding module 77. This domain is the non-catalytic carbohydrate binding module 77 (CBM77) present in Ruminococcus flavefaciens. CBMs fulfil a critical targeting function in plant cell wall depolymerisation. In CBM77, a cluster of conserved basic residues (Lys1092, Lys1107 and Lys1162) confer calcium-independent recognition of homogalacturonan.
smart00656 Amb_all 4.15e-29 240 405 17 190
Amb_all domain.
pfam00544 Pec_lyase_C 6.05e-17 264 401 61 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
pfam13229 Beta_helix 1.32e-04 744 923 17 157
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AOR96287.1 0.0 34 1071 48 1108
QMW93302.1 0.0 34 1071 48 1108
BBK78741.1 0.0 34 1071 48 1108
ADL51369.1 0.0 29 1056 41 1249
ABX41986.1 4.23e-307 5 1061 3 1168

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1RU4_A 2.17e-34 640 1043 18 374
ChainA, Pectate lyase [Dickeya chrysanthemi]
5FU5_A 1.29e-21 1120 1223 10 111
Thecomplexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition [Ruminococcus flavefaciens]
3VMV_A 1.19e-20 240 403 80 248
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
1VBL_A 5.23e-20 240 401 133 330
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
3ZSC_A 1.18e-19 234 386 63 221
Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0C1A6 2.86e-35 640 1043 43 399
Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1
P22751 8.34e-34 628 927 378 639
Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1
P0C1A7 1.89e-33 640 1043 43 399
Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1
Q8GCB2 7.90e-27 188 409 62 280
Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1
Q65DC2 7.90e-27 188 409 62 280
Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000467 0.998715 0.000191 0.000233 0.000190 0.000169

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003355_02409.