Species | Lachnoclostridium phytofermentans_A | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Lineage | Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium; Lachnoclostridium phytofermentans_A | |||||||||||
CAZyme ID | MGYG000003355_00349 | |||||||||||
CAZy Family | GH5 | |||||||||||
CAZyme Description | hypothetical protein | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 6450; End: 8396 Strand: - |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
GH5 | 66 | 345 | 5.3e-82 | 0.9927536231884058 |
CBM46 | 374 | 458 | 4.5e-17 | 0.9770114942528736 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
pfam00150 | Cellulase | 1.53e-43 | 56 | 346 | 4 | 271 | Cellulase (glycosyl hydrolase family 5). |
pfam18448 | CBM46 | 4.36e-29 | 464 | 564 | 2 | 103 | Carbohydrate binding domain. Carbohydrate active enzymes (CAZYmes) that target recalcitrant polysaccharides are modular enzymes containing noncatalytic carbohydrate-binding modules (CBMs) that direct enzymes to their cognate substrate, thus potentiating catalysis. The structure of Bacillus halodurans endo-beta-1,4-glucanase B (Cel5B) reveals that CBM46 is tightly associated with the catalytic module and, dependent on the glucan presented to the enzyme, can contribute directly to substrate binding or play a targeting role in directing the enzyme to regions of the plant cell wall rich in the polysaccharide hydrolyzed by the enzyme. The CBM46 domain displays a classic beta-sandwich jelly roll fold. Against beta-1,3-1,4-glucans CBM46 domain participates in productive substrate binding and thus plays a direct role in the hydrolytic activity of the enzyme. |
COG2730 | BglC | 1.26e-28 | 35 | 355 | 41 | 371 | Aryl-phospho-beta-D-glucosidase BglC, GH1 family [Carbohydrate transport and metabolism]. |
PRK11198 | PRK11198 | 2.56e-15 | 547 | 644 | 38 | 143 | LysM domain/BON superfamily protein; Provisional |
cd00118 | LysM | 5.23e-11 | 599 | 646 | 3 | 45 | Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
AUS96699.1 | 4.44e-256 | 4 | 563 | 4 | 563 |
BCN31364.1 | 1.23e-249 | 1 | 636 | 1 | 616 |
ADL52313.1 | 3.86e-228 | 1 | 564 | 1 | 567 |
BAV13065.1 | 3.86e-228 | 1 | 564 | 1 | 567 |
ACZ98603.1 | 1.33e-218 | 1 | 563 | 1 | 560 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
4V2X_A | 5.45e-157 | 28 | 564 | 46 | 582 | ChainA, Endo-beta-1,4-glucanase (cellulase B) [Halalkalibacterium halodurans] |
5XRC_A | 3.40e-149 | 22 | 549 | 26 | 552 | ATrimodular GH5_4 Subfamily Endoglucanase Structure with Large Unit Cell [Bacillus sp. BG-CS10],5XRC_B A Trimodular GH5_4 Subfamily Endoglucanase Structure with Large Unit Cell [Bacillus sp. BG-CS10],5XRC_C A Trimodular GH5_4 Subfamily Endoglucanase Structure with Large Unit Cell [Bacillus sp. BG-CS10] |
5E0C_A | 4.13e-149 | 39 | 549 | 11 | 519 | StructuralInsight of a Trimodular Halophilic Cellulase with a Family 46 Carbohydrate-Binding Module [Bacillus sp. BG-CS10] |
5E09_A | 1.05e-143 | 39 | 549 | 11 | 519 | StructuralInsight of a Trimodular Halophilic Cellulase with a Family 46 Carbohydrate-Binding Module [Bacillus sp. BG-CS10] |
4YZP_A | 5.29e-67 | 23 | 516 | 9 | 494 | Crystalstructure of a tri-modular GH5 (subfamily 4) endo-beta-1, 4-glucanase from Bacillus licheniformis [Bacillus licheniformis],4YZT_A Crystal structure of a tri-modular GH5 (subfamily 4) endo-beta-1, 4-glucanase from Bacillus licheniformis complexed with cellotetraose [Bacillus licheniformis] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
P23550 | 1.79e-152 | 36 | 549 | 35 | 547 | Endoglucanase B OS=Paenibacillus lautus OX=1401 GN=celB PE=3 SV=1 |
P28623 | 8.30e-48 | 38 | 355 | 43 | 350 | Endoglucanase D OS=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) OX=573061 GN=engD PE=1 SV=2 |
P23660 | 2.11e-46 | 42 | 351 | 31 | 338 | Endoglucanase A OS=Ruminococcus albus OX=1264 GN=celA PE=1 SV=1 |
P28621 | 3.20e-46 | 37 | 355 | 41 | 352 | Endoglucanase B OS=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) OX=573061 GN=engB PE=3 SV=1 |
P10477 | 3.22e-45 | 42 | 346 | 61 | 354 | Cellulase/esterase CelE OS=Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=celE PE=1 SV=2 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
0.000222 | 0.999070 | 0.000224 | 0.000171 | 0.000155 | 0.000138 |
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