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CAZyme Information: MGYG000003337_01565

You are here: Home > Sequence: MGYG000003337_01565

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Ruminococcus_C sp900765125
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus_C; Ruminococcus_C sp900765125
CAZyme ID MGYG000003337_01565
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
939 MGYG000003337_268|CGC1 103622.51 4.7367
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003337 2462692 MAG China Asia
Gene Location Start: 15610;  End: 18429  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003337_01565.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 204 431 1.1e-31 0.9455445544554455
CBM13 555 700 9.7e-23 0.7021276595744681
CBM13 711 868 1.3e-17 0.776595744680851

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 1.31e-28 165 509 30 340
Pectate lyase [Carbohydrate transport and metabolism].
pfam14200 RicinB_lectin_2 1.16e-16 552 635 10 89
Ricin-type beta-trefoil lectin domain-like.
pfam14200 RicinB_lectin_2 6.06e-15 595 684 5 89
Ricin-type beta-trefoil lectin domain-like.
smart00656 Amb_all 5.04e-14 234 431 17 187
Amb_all domain.
pfam14200 RicinB_lectin_2 2.04e-12 641 739 1 89
Ricin-type beta-trefoil lectin domain-like.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL16867.1 1.18e-177 29 932 33 912
CBL17651.1 2.95e-160 2 933 5 893
CDM70399.1 2.04e-153 32 699 31 696
AUO18238.1 2.12e-131 24 699 27 707
ANY68265.1 1.11e-73 15 529 21 538

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3ZSC_A 4.71e-14 185 423 20 235
Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]
1PCL_A 6.80e-08 182 430 14 276
ChainA, PECTATE LYASE E [Dickeya chrysanthemi]
5B2H_A 2.45e-07 690 847 139 278
Crystalstructure of HA33 from Clostridium botulinum serotype C strain Yoichi [Clostridium botulinum],5B2H_B Crystal structure of HA33 from Clostridium botulinum serotype C strain Yoichi [Clostridium botulinum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
O34819 2.71e-19 165 511 32 337
Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1
P94449 1.60e-18 165 511 32 337
Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1
Q9WYR4 4.36e-14 185 423 47 262
Pectate trisaccharide-lyase OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=pelA PE=1 SV=1
B1L969 1.36e-13 185 423 45 260
Pectate trisaccharide-lyase OS=Thermotoga sp. (strain RQ2) OX=126740 GN=pelA PE=3 SV=1
A1CYB8 1.30e-10 209 443 68 271
Probable pectate lyase A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000318 0.998935 0.000203 0.000203 0.000167 0.000143

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003337_01565.