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CAZyme Information: MGYG000003308_00880

You are here: Home > Sequence: MGYG000003308_00880

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia_A; Christensenellales; CAG-74; Firm-10;
CAZyme ID MGYG000003308_00880
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
709 MGYG000003308_310|CGC1 79181.67 5.0388
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003308 2610589 MAG China Asia
Gene Location Start: 4495;  End: 6624  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003308_00880.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 136 402 7e-43 0.7323076923076923

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 8.38e-19 169 355 232 421
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 9.62e-09 183 413 93 288
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02793 PLN02793 0.001 142 330 138 330
Probable polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BCJ98361.1 3.57e-227 1 708 1 715
BCJ93866.1 6.78e-223 1 706 1 713
AWW32777.1 1.00e-60 2 409 42 488
ALJ04708.1 8.66e-57 42 368 105 445
APA66227.1 4.37e-56 2 395 41 450

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 2.35e-06 160 257 173 272
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000048 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003308_00880.