You are browsing environment: HUMAN GUT
CAZyme Information: MGYG000003208_02407
You are here: Home > Sequence: MGYG000003208_02407
Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Pseudomonas_E extremaustralis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas_E; Pseudomonas_E extremaustralis | |||||||||||
| CAZyme ID | MGYG000003208_02407 | |||||||||||
| CAZy Family | GT19 | |||||||||||
| CAZyme Description | Lipid-A-disaccharide synthase | |||||||||||
| CAZyme Property |
|
|||||||||||
| Genome Property |
|
|||||||||||
| Gene Location | Start: 290577; End: 291716 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GT19 | 6 | 356 | 3.1e-138 | 0.9915254237288136 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK00025 | lpxB | 0.0 | 3 | 375 | 1 | 378 | lipid-A-disaccharide synthase; Reviewed |
| COG0763 | LpxB | 4.81e-173 | 4 | 372 | 2 | 379 | Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis]. |
| pfam02684 | LpxB | 1.84e-141 | 6 | 368 | 1 | 374 | Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. |
| TIGR00215 | lpxB | 5.29e-137 | 6 | 371 | 8 | 385 | lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides] |
| PRK01021 | lpxB | 2.93e-61 | 1 | 361 | 209 | 594 | lipid-A-disaccharide synthase; Reviewed |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| SDF51056.1 | 8.20e-267 | 1 | 379 | 1 | 379 |
| QTV18670.1 | 6.18e-262 | 1 | 379 | 1 | 379 |
| AYF47256.1 | 6.18e-262 | 1 | 379 | 1 | 379 |
| AJZ92416.1 | 1.25e-261 | 1 | 379 | 1 | 379 |
| QQD28914.1 | 1.25e-261 | 1 | 379 | 1 | 379 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5W8N_A | 2.52e-121 | 4 | 371 | 7 | 380 | LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)] |
| 5W8S_A | 2.52e-121 | 4 | 371 | 7 | 380 | LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| C3K6G9 | 4.81e-260 | 1 | 379 | 1 | 379 | Lipid-A-disaccharide synthase OS=Pseudomonas fluorescens (strain SBW25) OX=216595 GN=lpxB PE=3 SV=1 |
| Q3KH99 | 6.50e-239 | 1 | 373 | 1 | 373 | Lipid-A-disaccharide synthase OS=Pseudomonas fluorescens (strain Pf0-1) OX=205922 GN=lpxB PE=3 SV=1 |
| Q4KHG3 | 4.73e-236 | 1 | 373 | 1 | 373 | Lipid-A-disaccharide synthase OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=lpxB PE=3 SV=1 |
| Q886N0 | 6.99e-228 | 4 | 373 | 5 | 375 | Lipid-A-disaccharide synthase OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=lpxB PE=3 SV=1 |
| Q48F72 | 1.91e-225 | 4 | 373 | 5 | 375 | Lipid-A-disaccharide synthase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=lpxB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000051 | 0.000001 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |