dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000003208_01065

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Basic Information help

Species

Pseudomonas_E extremaustralis

Lineage

Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas_E; Pseudomonas_E extremaustralis

CAZyme ID

MGYG000003208_01065

CAZy Family

AA10

CAZyme Description

GlcNAc-binding protein A

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
490	MGYG000003208_14\|CGC5	52516.06	5.2733

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003208	6254364	MAG	United States	North America

Gene Location

Start: 174251; End: 175723 Strand: -

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000003208_01065.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
AA10	17	219	1.9e-39	0.9943820224719101
CBM73	436	487	8.3e-21	0.9629629629629629

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd21177	LPMO_AA10	1.15e-53	17	219	1	180	lytic polysaccharide monooxygenase (LPMO) auxiliary activity family 10 (AA10). AA10 proteins are copper-dependent lytic polysaccharide monooxygenases (LPMOs), which may act on chitin or cellulose. The family used to be called CBM33. Activities in this family include lytic cellulose monooxygenase (C1-hydroxylating) (EC 1.14.99.54), lytic cellulose monooxygenase (C4-dehydrogenating) (EC 1.14.99.56), lytic chitin monooxygenase (EC 1.14.99.53), and lytic xylan monooxygenase/xylan oxidase (glycosidic bond-cleaving) (EC 1.14.99.-). Also included are viral chitin-binding glycoproteins such as fusolin and spheroidin-like proteins.
pfam03067	LPMO_10	1.38e-45	17	218	1	186	Lytic polysaccharide mono-oxygenase, cellulose-degrading. This domain is found associated with a wide variety of cellulose binding domains. This is a family of two very closely related proteins that together act as both a C1- and a C4-oxidising lytic polysaccharide mono-oxygenase, degrading cellulose. This domain is also found in baculoviral spheroidins and spindolins, protein of unknown function.
cd21178	Fusolin-like	9.39e-43	17	220	1	227	fusolin and similar proteins. Fusolin is a protein found in spindles of insect poxviruses that resembles the lytic polysaccharide monooxygenases of chitinovorous bacteria and may function to disrupt the chitin-rich peritrophic matrix that protects insects against oral infections. Thus, it is a component of the virus occlusion bodies (which are large proteinaceous polyhedra) that protect the virus from the outside environment for extended periods until they are ingested by insect larvae.
COG3397	COG3397	6.32e-41	16	323	29	308	Predicted carbohydrate-binding protein, contains CBM5 and CBM33 domains [General function prediction only].
PHA03387	gp37	3.76e-39	16	218	19	248	spherodin-like protein; Provisional

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AOE70420.1	4.40e-234	2	489	11	498
AHC38315.1	4.40e-234	2	489	11	498
AOE76195.1	4.40e-234	2	489	11	498
QOU04789.1	4.40e-234	2	489	11	498
AMS18973.1	4.20e-233	2	489	14	511

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
4YN2_A	7.53e-23	17	227	1	237	THEATOMIC STRUCTURE OF WISEANA SPP ENTOMOPOXVIRUS (WSEPV) FUSOLIN SPINDLES [unidentified entomopoxvirus]
5FJQ_A	1.64e-20	17	219	1	178	Structuraland functional analysis of a lytic polysaccharide monooxygenase important for efficient utilization of chitin in Cellvibrio japonicus [Cellvibrio japonicus],5FJQ_B Structural and functional analysis of a lytic polysaccharide monooxygenase important for efficient utilization of chitin in Cellvibrio japonicus [Cellvibrio japonicus],5FJQ_C Structural and functional analysis of a lytic polysaccharide monooxygenase important for efficient utilization of chitin in Cellvibrio japonicus [Cellvibrio japonicus]
4YN1_A	2.45e-20	17	227	1	240	THEATOMIC STRUCTURE OF ANOMALA CUPREA ENTOMOPOXVIRUS (ACEPV) FUSOLIN SPINDLES [Anomala cuprea entomopoxvirus]
4X27_A	6.88e-20	17	218	1	231	Structuralbasis for the enhancement of virulence by entomopoxvirus fusolin and its in vivo crystallization into viral spindles (complex with Copper) [Entomopoxvirinae],4X29_A Structural basis for the enhancement of virulence by entomopoxvirus fusolin and its in vivo crystallization into viral spindles (complex with Zinc) [Entomopoxvirinae]
4OW5_A	6.95e-20	17	218	1	231	Structuralbasis for the enhancement of virulence by entomopoxvirus fusolin and its in vivo crystallization into viral spindles [unidentified entomopoxvirus]

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q02I11	9.63e-32	4	486	13	386	Chitin-binding protein CbpD OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=cpbD PE=1 SV=1
Q9I589	6.43e-31	4	486	13	386	Chitin-binding protein CbpD OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=cbpD PE=1 SV=1
Q65328	6.23e-24	8	218	11	246	Spheroidin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus OX=262177 GN=SLP PE=2 SV=1
P23058	1.85e-22	16	218	19	247	Spheroidin-like protein OS=Autographa californica nuclear polyhedrosis virus OX=46015 GN=SLP PE=2 SV=1
P23061	3.00e-18	16	228	20	262	Spindolin OS=Choristoneura biennis entomopoxvirus OX=10288 GN=SPH PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000209	0.999209	0.000145	0.000146	0.000135	0.000134

TMHMM Annotations help

There is no transmembrane helices in MGYG000003208_01065.