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CAZyme Information: MGYG000003157_01204

You are here: Home > Sequence: MGYG000003157_01204

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Collinsella sp900556515
Lineage Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; Collinsella sp900556515
CAZyme ID MGYG000003157_01204
CAZy Family GH28
CAZyme Description Polygalacturonase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
199 21930.87 4.9433
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003157 1687971 MAG United States North America
Gene Location Start: 12;  End: 611  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003157_01204.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 13 146 3.2e-20 0.3630769230769231

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.89e-24 1 194 339 529
Polygalacturonase [Carbohydrate transport and metabolism].
PLN02218 PLN02218 3.43e-06 22 85 303 363
polygalacturonase ADPG
PLN02793 PLN02793 5.31e-06 22 79 288 342
Probable polygalacturonase
PLN03010 PLN03010 4.50e-04 14 106 256 348
polygalacturonase
PLN02155 PLN02155 0.005 21 142 255 365
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QIA34431.1 8.26e-126 7 199 339 531
ATP54717.1 4.96e-122 7 199 339 531
QUC03565.1 2.89e-84 7 198 338 529
QOL31033.1 2.92e-80 13 196 343 526
QOL34309.1 2.92e-80 13 196 343 526

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27644 4.27e-21 13 174 134 295
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000074 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003157_01204.