CAZyme Information: MGYG000003139_01616

Basic Information

• Species: Clostridium_G cochlearium
• Lineage: Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium_G; Clostridium_G cochlearium
• CAZyme ID: MGYG000003139_01616
• CAZy Family: GH39
• CAZyme Description: HTH-type transcriptional activator RhaS

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
692	MGYG000003139_18|CGC1	82179.39	4.8073

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003139	2361241	MAG	United States	North America

• Gene Location: Start: 42715; End: 44793 Strand: -

Full Sequence      

MRKEYITFPQDMPIDIVFASIKEYPFHWHNCIQIIFVLEGTIKVTIESGTYELVKNDLEI
INVDETHRIFSNDKNNKVLIFYFDINFFEKYYNDMENIFFYTNTSDDGAQASEEYDELRT
ILSILLCEAVQKQVDYDEEIESTLVDLLYHLINNFHYLMYEQEDFRENKDQLGRYHRIAK
YIYNNYNNKISLQDIAEKEFLSTHYLSHEIKYAMGYSFTDLLNLTRVEESVKLLLDTDKT
ISEISEEVGFSHTRYYNKHFKIHFKSSPSQFRKKYKVDEETFQKQKKIVFFELKDSLDYI
YPYLQNYDRYNFENKIVKVRIDVDDEIDEFDKSFKDVINIGDAFDLLLEDNKDILEEIQE
EISFNYGRIFNLFSSDMGIFPSSKFFNWNRTKSVLEYMESINLKPLILIGSNDFSEDEFI
RILKSFINYFMDIEGIDIYNLKFQFSSNLKKELIDKISNLLTSHEFDICDDIFVDSFDIN
LIYDTAYMIPYIINKTIVKNKNWNNLRAFDTLDSQVNLTNEVFFGYPGIVNDMGIKKPSY
YAYYLLNKLGDIIVCSGDGYIVTKTEDEYQILLYSYNEDLDKLVSFEDFSKLRGFKNNIK
QKLSLNILNIPTDVRMTVYEVNEKIGSSYNYWKGMGSPIRLNKEEKEILHKASFPKIHFR
YAKKSTVLNIISELQSYGATLILIKKISKHLK

Enzyme Prediction     

No EC number prediction in MGYG000003139_01616.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH39	480	640	1.4e-17	0.35498839907192575

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG2207	AraC	2.03e-22	155	276	2	123	AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
smart00342	HTH_ARAC	5.69e-20	189	272	1	84	helix_turn_helix, arabinose operon control protein.
pfam12833	HTH_18	1.57e-17	195	274	1	81	Helix-turn-helix domain.
COG4753	YesN	4.74e-13	1	276	190	475	Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription].
COG3664	XynB	9.73e-11	528	657	273	396	Beta-xylosidase [Carbohydrate transport and metabolism].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QLY81077.1	0.0	1	692	1	693
QXE20743.1	1.52e-312	1	687	1	688
AZV56511.1	2.89e-310	1	687	1	688
QAT40622.1	1.66e-309	1	686	1	687
ATD56640.1	4.36e-305	1	685	1	686

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6SWI_A	1.40e-10	177	281	9	114	TheC-terminal domain of AraT, a response regulator from Geobacillus stearothermophilus [Geobacillus stearothermophilus]
4M29_A	4.66e-07	523	649	334	460	Structureof a GH39 Beta-xylosidase from Caulobacter crescentus [Caulobacter vibrioides CB15]
4EKJ_A	8.11e-07	523	649	334	460	ChainA, Beta-xylosidase [Caulobacter vibrioides]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q8NYT6	4.02e-11	30	657	21	712	Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1
Q6GD21	4.02e-11	30	657	21	712	Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1
Q6GKK1	9.19e-11	30	686	21	741	Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1
Q7A882	2.76e-10	30	657	21	712	Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1
Q99XB1	2.76e-10	30	657	21	712	Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000041	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003139_01616.