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CAZyme Information: MGYG000003137_00798
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Bradyrhizobium sp000015165 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Bradyrhizobium; Bradyrhizobium sp000015165 | |||||||||||
| CAZyme ID | MGYG000003137_00798 | |||||||||||
| CAZy Family | CE11 | |||||||||||
| CAZyme Description | UDP-3-O-acyl-N-acetylglucosamine deacetylase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 36217; End: 37176 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| CE11 | 6 | 278 | 2.1e-104 | 0.992619926199262 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK13186 | lpxC | 1.45e-170 | 5 | 300 | 3 | 295 | UDP-3-O-acyl-N-acetylglucosamine deacetylase. |
| pfam03331 | LpxC | 1.81e-153 | 6 | 279 | 1 | 271 | UDP-3-O-acyl N-acetylglycosamine deacetylase. The enzymes in this family catalyze the second step in the biosynthetic pathway for lipid A. |
| COG0774 | LpxC | 1.54e-140 | 5 | 293 | 3 | 291 | UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell wall/membrane/envelope biogenesis]. |
| TIGR00325 | lpxC | 1.20e-101 | 5 | 287 | 2 | 281 | UDP-3-0-acyl N-acetylglucosamine deacetylase. UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc deacetylase from E. coli , LpxC, was previously designated EnvA. This enzyme is involved in lipid-A precursor biosynthesis. It is essential for cell viability. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides] |
| PRK13188 | PRK13188 | 3.28e-82 | 6 | 270 | 5 | 291 | bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ABQ38089.1 | 4.46e-227 | 1 | 319 | 1 | 319 |
| SMX60409.1 | 1.23e-208 | 1 | 319 | 1 | 319 |
| BAM87971.1 | 3.38e-206 | 1 | 319 | 1 | 319 |
| CAL79322.1 | 9.69e-206 | 1 | 319 | 1 | 319 |
| QWG24645.1 | 7.52e-187 | 1 | 319 | 1 | 319 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5U39_A | 3.45e-79 | 5 | 293 | 5 | 292 | Pseudomonasaeruginosa LpxC in complex with CHIR-090 [Pseudomonas aeruginosa PAO1] |
| 4J3D_A | 3.67e-79 | 5 | 293 | 3 | 290 | Pseudomonasaeruginosa LpxC in complex with a hydroxamate inhibitor [Pseudomonas aeruginosa PAO1],4J3D_B Pseudomonas aeruginosa LpxC in complex with a hydroxamate inhibitor [Pseudomonas aeruginosa PAO1] |
| 5U3B_A | 3.91e-79 | 5 | 293 | 3 | 290 | Pseudomonasaeruginosa LpxC in complex with NVS-LPXC-01 [Pseudomonas aeruginosa PAO1],5U3B_B Pseudomonas aeruginosa LpxC in complex with NVS-LPXC-01 [Pseudomonas aeruginosa PAO1],6MAE_A CHAIN A. UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase PA-LPXC Complexed with (R)-3-((S)-3-(4-(cyclopropylethynyl)phenyl)-2-oxooxazolidin-5-yl)-N-hydroxy-2-methyl-2-(methylsulfonyl)propenamide [Pseudomonas aeruginosa PAO1] |
| 7K99_A | 4.43e-79 | 5 | 293 | 3 | 290 | CrystalStructure of P. aeruginosa LpxC with N-Hydroxyformamide inhibitor 19 [Pseudomonas aeruginosa PAO1],7K99_C Crystal Structure of P. aeruginosa LpxC with N-Hydroxyformamide inhibitor 19 [Pseudomonas aeruginosa PAO1],7K9A_A Crystal Structure of P. aeruginosa LpxC with N-Hydroxyformamide inhibitor [Pseudomonas aeruginosa PAO1],7K9A_C Crystal Structure of P. aeruginosa LpxC with N-Hydroxyformamide inhibitor [Pseudomonas aeruginosa PAO1] |
| 6MO4_A | 4.43e-79 | 5 | 293 | 7 | 294 | Co-Crystalstructure of P. aeruginosa LpxC-50067 complex [Pseudomonas aeruginosa PAO1] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| B0CHL2 | 7.21e-92 | 6 | 288 | 5 | 285 | UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) OX=470137 GN=lpxC PE=3 SV=1 |
| A5VRG8 | 7.21e-92 | 6 | 288 | 5 | 285 | UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) OX=444178 GN=lpxC PE=3 SV=1 |
| B2S6P7 | 7.21e-92 | 6 | 288 | 5 | 285 | UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Brucella abortus (strain S19) OX=430066 GN=lpxC PE=3 SV=1 |
| Q8FZP9 | 7.21e-92 | 6 | 288 | 5 | 285 | UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=lpxC PE=3 SV=1 |
| A9M683 | 7.21e-92 | 6 | 288 | 5 | 285 | UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) OX=483179 GN=lpxC PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.994015 | 0.005966 | 0.000033 | 0.000007 | 0.000005 | 0.000009 |