logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000003005_01041

You are here: Home > Sequence: MGYG000003005_01041

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus;
CAZyme ID MGYG000003005_01041
CAZy Family CBM79
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
695 MGYG000003005_64|CGC1 75066.56 4.069
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003005 2620760 MAG United States North America
Gene Location Start: 5747;  End: 7834  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003005_01041.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CBM79 431 553 4.8e-19 0.9636363636363636

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam18522 DUF5620 2.69e-21 247 407 1 119
Domain of unknown function (DUF5620). This is a domain of unknown function predicted to be a carbohydrate binding module.
cd14256 Dockerin_I 4.87e-06 618 685 2 57
Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
EWM54821.1 4.00e-199 1 693 1 650
CBL17555.1 2.52e-79 192 688 175 606
CCZ83178.1 2.35e-47 66 558 89 673
CAB51934.1 1.78e-17 617 691 438 511
AAB26620.1 1.78e-17 617 691 438 511

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5M2S_B 8.86e-26 616 691 27 101
R.flavefaciens' third ScaB cohesin in complex with a group 1 dockerin [Ruminococcus flavefaciens FD-1]
5M2O_B 6.11e-12 618 688 29 90
R.flavefaciens' third ScaB cohesin in complex with a group 1 dockerin [Ruminococcus flavefaciens FD-1]
5N5P_B 6.12e-06 613 682 4 67
Crystalstructure of Ruminococcus flavefaciens' type III complex containing the fifth cohesin from scaffoldin B and the dockerin from scaffoldin A [Ruminococcus flavefaciens FD-1],5N5P_D Crystal structure of Ruminococcus flavefaciens' type III complex containing the fifth cohesin from scaffoldin B and the dockerin from scaffoldin A [Ruminococcus flavefaciens FD-1]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q53317 3.56e-18 617 691 438 511
Xylanase/beta-glucanase OS=Ruminococcus flavefaciens OX=1265 GN=xynD PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.025715 0.330324 0.643114 0.000338 0.000226 0.000275

TMHMM  Annotations      download full data without filtering help

start end
13 35