logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000002552_01328

You are here: Home > Sequence: MGYG000002552_01328

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lachnospira sp000436535
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira; Lachnospira sp000436535
CAZyme ID MGYG000002552_01328
CAZy Family PL9
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1663 MGYG000002552_7|CGC1 178926.79 4.452
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002552 3071336 MAG China Asia
Gene Location Start: 21292;  End: 26283  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002552_01328.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL9 924 1318 2.3e-123 0.9786666666666667

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd00063 FN3 9.81e-06 476 543 17 92
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
pfam13229 Beta_helix 6.72e-05 1070 1216 9 128
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
smart00060 FN3 1.59e-04 467 532 8 82
Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
pfam00041 fn3 3.45e-04 467 528 7 75
Fibronectin type III domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ADL35206.1 0.0 35 1407 1153 2520
ABX44216.1 2.06e-291 315 1325 184 1190
BCJ94249.1 4.50e-285 229 1328 94 1193
ACR71158.1 1.89e-213 352 1325 608 1644
AUC73536.1 6.51e-172 546 1315 85 852

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1RU4_A 1.32e-42 928 1316 18 370
ChainA, Pectate lyase [Dickeya chrysanthemi]
5OLQ_A 2.66e-16 924 1186 2 303
Rhamnogalacturonanlyase [Bacteroides thetaiotaomicron],5OLQ_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLQ_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLS_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P22751 5.90e-56 577 1208 80 646
Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1
P0C1A6 2.04e-42 928 1316 43 395
Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1
P0C1A7 1.25e-41 928 1316 43 395
Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.002258 0.992813 0.002779 0.001624 0.000274 0.000203

TMHMM  Annotations      download full data without filtering help

start end
9 31
1633 1655