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CAZyme Information: MGYG000002533_01806

You are here: Home > Sequence: MGYG000002533_01806

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Vibrio vulnificus
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Vibrionaceae; Vibrio; Vibrio vulnificus
CAZyme ID MGYG000002533_01806
CAZy Family CBM13
CAZyme Description Cytolysin
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
471 MGYG000002533_3|CGC3 52872.01 7.616
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002533 4933179 Isolate Bangladesh Asia
Gene Location Start: 484523;  End: 485938  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002533_01806.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam07968 Leukocidin 1.45e-74 72 331 1 250
Leukocidin/Hemolysin toxin family.
smart00458 RICIN 2.09e-17 343 465 1 118
Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
cd00161 RICIN 2.35e-15 340 463 1 123
Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
pfam00652 Ricin_B_lectin 2.86e-08 338 430 1 94
Ricin-type beta-trefoil lectin domain.
pfam00652 Ricin_B_lectin 4.82e-07 317 420 32 126
Ricin-type beta-trefoil lectin domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BAC99982.1 0.0 1 471 1 471
AMG10720.1 0.0 1 471 1 471
AUJ37047.1 0.0 1 471 1 471
ADV88903.1 0.0 1 471 1 471
ARN68290.1 0.0 1 471 1 471

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4OWJ_A 4.90e-95 336 471 3 138
CrystalStructure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin [Vibrio vulnificus CMCP6],4OWJ_B Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin [Vibrio vulnificus CMCP6],4OWJ_C Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin [Vibrio vulnificus CMCP6],4OWJ_D Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin [Vibrio vulnificus CMCP6],4OWJ_E Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin [Vibrio vulnificus CMCP6],4OWJ_F Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin [Vibrio vulnificus CMCP6],4OWJ_G Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin [Vibrio vulnificus CMCP6],4OWK_A Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin with N-Acetyl-D-Galactosamine Bound [Vibrio vulnificus CMCP6],4OWK_B Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin with N-Acetyl-D-Galactosamine Bound [Vibrio vulnificus CMCP6],4OWK_C Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin with N-Acetyl-D-Galactosamine Bound [Vibrio vulnificus CMCP6],4OWK_D Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin with N-Acetyl-D-Galactosamine Bound [Vibrio vulnificus CMCP6],4OWK_E Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin with N-Acetyl-D-Galactosamine Bound [Vibrio vulnificus CMCP6],4OWK_F Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin with N-Acetyl-D-Galactosamine Bound [Vibrio vulnificus CMCP6],4OWK_G Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin with N-Acetyl-D-Galactosamine Bound [Vibrio vulnificus CMCP6],4OWL_A Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin with N-Acetyl-D-Lactosamine Bound [Vibrio vulnificus CMCP6],4OWL_B Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin with N-Acetyl-D-Lactosamine Bound [Vibrio vulnificus CMCP6],4OWL_C Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin with N-Acetyl-D-Lactosamine Bound [Vibrio vulnificus CMCP6],4OWL_D Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin with N-Acetyl-D-Lactosamine Bound [Vibrio vulnificus CMCP6],4OWL_E Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin with N-Acetyl-D-Lactosamine Bound [Vibrio vulnificus CMCP6],4OWL_F Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin with N-Acetyl-D-Lactosamine Bound [Vibrio vulnificus CMCP6],4OWL_G Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin with N-Acetyl-D-Lactosamine Bound [Vibrio vulnificus CMCP6]
3O44_A 4.72e-33 51 422 48 411
CrystalStructure of the Vibrio cholerae Cytolysin (HlyA) Heptameric Pore [Vibrio cholerae 12129(1)],3O44_B Crystal Structure of the Vibrio cholerae Cytolysin (HlyA) Heptameric Pore [Vibrio cholerae 12129(1)],3O44_C Crystal Structure of the Vibrio cholerae Cytolysin (HlyA) Heptameric Pore [Vibrio cholerae 12129(1)],3O44_D Crystal Structure of the Vibrio cholerae Cytolysin (HlyA) Heptameric Pore [Vibrio cholerae 12129(1)],3O44_E Crystal Structure of the Vibrio cholerae Cytolysin (HlyA) Heptameric Pore [Vibrio cholerae 12129(1)],3O44_F Crystal Structure of the Vibrio cholerae Cytolysin (HlyA) Heptameric Pore [Vibrio cholerae 12129(1)],3O44_G Crystal Structure of the Vibrio cholerae Cytolysin (HlyA) Heptameric Pore [Vibrio cholerae 12129(1)],3O44_H Crystal Structure of the Vibrio cholerae Cytolysin (HlyA) Heptameric Pore [Vibrio cholerae 12129(1)],3O44_I Crystal Structure of the Vibrio cholerae Cytolysin (HlyA) Heptameric Pore [Vibrio cholerae 12129(1)],3O44_J Crystal Structure of the Vibrio cholerae Cytolysin (HlyA) Heptameric Pore [Vibrio cholerae 12129(1)],3O44_K Crystal Structure of the Vibrio cholerae Cytolysin (HlyA) Heptameric Pore [Vibrio cholerae 12129(1)],3O44_L Crystal Structure of the Vibrio cholerae Cytolysin (HlyA) Heptameric Pore [Vibrio cholerae 12129(1)],3O44_M Crystal Structure of the Vibrio cholerae Cytolysin (HlyA) Heptameric Pore [Vibrio cholerae 12129(1)],3O44_N Crystal Structure of the Vibrio cholerae Cytolysin (HlyA) Heptameric Pore [Vibrio cholerae 12129(1)]
1XEZ_A 8.57e-33 51 422 176 539
CrystalStructure Of The Vibrio Cholerae Cytolysin (HlyA) Pro-Toxin With Octylglucoside Bound [Vibrio cholerae]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P19247 0.0 1 471 1 471
Cytolysin OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=vvhA PE=1 SV=2
P55870 6.17e-39 60 425 213 569
Hemolysin ahh1 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) OX=380703 GN=ahh1 PE=3 SV=2
P09545 1.50e-32 51 422 196 559
Hemolysin OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=hlyA PE=1 SV=2
Q08677 4.48e-18 60 425 171 526
Hemolysin 4 OS=Aeromonas salmonicida OX=645 GN=ash4 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000249 0.999087 0.000163 0.000165 0.000155 0.000144

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002533_01806.