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CAZyme Information: MGYG000002525_03430

You are here: Home > Sequence: MGYG000002525_03430

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Yersinia intermedia
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia intermedia
CAZyme ID MGYG000002525_03430
CAZy Family CBM32
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
159 MGYG000002525_13|CGC5 17179.53 6.982
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002525 5023222 Isolate Finland Europe
Gene Location Start: 182795;  End: 183274  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002525_03430.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CBM32 28 145 6.6e-22 0.9274193548387096

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00754 F5_F8_type_C 8.78e-17 26 145 1 127
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
cd00057 FA58C 2.37e-07 27 129 14 126
Substituted updates: Jan 31, 2002
pfam17132 Glyco_hydro_106 3.38e-07 26 129 175 282
alpha-L-rhamnosidase.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AVL36823.1 4.46e-109 1 159 1 159
ARB83073.1 4.46e-109 1 159 1 159
VDZ60966.1 2.58e-108 1 159 1 159
QGR68464.1 2.58e-108 1 159 1 159
QGR69466.1 2.58e-108 1 159 1 159

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2JD9_A 2.24e-89 20 159 6 145
Structureof a pectin binding carbohydrate binding module determined in an orthorhombic crystal form. [Yersinia enterocolitica],2JDA_A Structure of a pectin binding carbohydrate binding module determined in an monoclinic crystal form. [Yersinia enterocolitica],2JDA_B Structure of a pectin binding carbohydrate binding module determined in an monoclinic crystal form. [Yersinia enterocolitica]
7D29_A 4.78e-17 24 147 11 131
CBM32of AlyQ [Persicobacter sp. CCB-QB2],7D2A_A CBM32 of AlyQ in complex with 4,5-unsaturated mannuronic acid [Persicobacter sp. CCB-QB2]
5XNR_A 9.38e-16 24 147 11 131
TruncatedAlyQ with CBM32 and alginate lyase domains [Persicobacter sp. CCB-QB2]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.001044 0.971443 0.026561 0.000400 0.000277 0.000247

TMHMM  Annotations      download full data without filtering help

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