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CAZyme Information: MGYG000002521_05311
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phytobacter ursingii | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Phytobacter; Phytobacter ursingii | |||||||||||
| CAZyme ID | MGYG000002521_05311 | |||||||||||
| CAZy Family | GH28 | |||||||||||
| CAZyme Description | Endo-polygalacturonase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 4735604; End: 4736800 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 61 | 376 | 9e-79 | 0.8830769230769231 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam00295 | Glyco_hydro_28 | 3.49e-56 | 63 | 353 | 15 | 282 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| COG5434 | Pgu1 | 2.98e-44 | 31 | 323 | 94 | 407 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| PLN02218 | PLN02218 | 1.75e-30 | 129 | 329 | 159 | 360 | polygalacturonase ADPG |
| PLN02188 | PLN02188 | 3.54e-30 | 29 | 326 | 46 | 322 | polygalacturonase/glycoside hydrolase family protein |
| PLN02793 | PLN02793 | 2.04e-29 | 133 | 349 | 148 | 369 | Probable polygalacturonase |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AKL14495.1 | 1.83e-289 | 1 | 398 | 21 | 418 |
| AUV03489.1 | 2.72e-275 | 1 | 398 | 21 | 418 |
| QIH66065.1 | 2.97e-262 | 1 | 398 | 18 | 414 |
| QJF15511.1 | 2.97e-262 | 1 | 398 | 18 | 414 |
| AUU88343.1 | 8.13e-260 | 1 | 398 | 18 | 414 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1BHE_A | 2.02e-121 | 11 | 376 | 2 | 365 | ChainA, POLYGALACTURONASE [Pectobacterium carotovorum] |
| 7E56_A | 1.39e-17 | 129 | 332 | 71 | 273 | ChainA, Endo-polygalacturonase [Evansstolkia leycettana] |
| 6KVE_A | 1.51e-17 | 129 | 332 | 79 | 281 | ChainA, Endo-polygalacturonase [Evansstolkia leycettana] |
| 6KVH_A | 1.51e-17 | 129 | 332 | 79 | 281 | ChainA, endo-polygalacturonase [Evansstolkia leycettana] |
| 1NHC_A | 1.87e-14 | 135 | 344 | 77 | 288 | Structuralinsights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_B Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_C Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_D Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_E Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_F Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P26509 | 6.48e-121 | 9 | 376 | 26 | 391 | Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1 |
| P18192 | 1.30e-120 | 3 | 376 | 23 | 391 | Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1 |
| P58598 | 3.43e-78 | 39 | 370 | 78 | 454 | Polygalacturonase OS=Ralstonia solanacearum (strain GMI1000) OX=267608 GN=pglA PE=3 SV=1 |
| P20041 | 1.28e-77 | 29 | 370 | 67 | 452 | Polygalacturonase OS=Ralstonia solanacearum OX=305 GN=pglA PE=1 SV=1 |
| Q9FY19 | 3.07e-29 | 31 | 355 | 71 | 382 | Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.929685 | 0.069571 | 0.000376 | 0.000180 | 0.000084 | 0.000139 |