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CAZyme Information: MGYG000002505_00211
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Oxalobacter formigenes_B | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Burkholderiales; Burkholderiaceae; Oxalobacter; Oxalobacter formigenes_B | |||||||||||
| CAZyme ID | MGYG000002505_00211 | |||||||||||
| CAZy Family | GT19 | |||||||||||
| CAZyme Description | Lipid-A-disaccharide synthase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 253475; End: 254617 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GT19 | 4 | 358 | 2e-123 | 0.9858757062146892 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK00025 | lpxB | 8.29e-167 | 1 | 380 | 1 | 379 | lipid-A-disaccharide synthase; Reviewed |
| COG0763 | LpxB | 1.36e-130 | 1 | 378 | 1 | 381 | Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis]. |
| pfam02684 | LpxB | 2.90e-107 | 4 | 372 | 1 | 374 | Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. |
| TIGR00215 | lpxB | 2.55e-101 | 3 | 374 | 7 | 384 | lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides] |
| PRK01021 | lpxB | 7.38e-39 | 8 | 323 | 233 | 551 | lipid-A-disaccharide synthase; Reviewed |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ARQ78800.1 | 1.04e-234 | 6 | 380 | 1 | 375 |
| ARQ46736.1 | 1.04e-234 | 6 | 380 | 1 | 375 |
| QDX32623.1 | 1.04e-234 | 6 | 380 | 1 | 375 |
| BBB60788.1 | 2.89e-176 | 6 | 376 | 1 | 372 |
| BBB66812.1 | 5.82e-176 | 6 | 376 | 1 | 372 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5W8N_A | 9.60e-95 | 3 | 375 | 8 | 380 | LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)] |
| 5W8S_A | 1.36e-94 | 3 | 375 | 8 | 380 | LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q2SWY5 | 5.36e-122 | 4 | 376 | 10 | 382 | Lipid-A-disaccharide synthase OS=Burkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CIP 106301 / E264) OX=271848 GN=lpxB PE=3 SV=1 |
| A3NWL7 | 8.69e-121 | 4 | 376 | 10 | 382 | Lipid-A-disaccharide synthase OS=Burkholderia pseudomallei (strain 1106a) OX=357348 GN=lpxB PE=3 SV=1 |
| Q62JD7 | 8.69e-121 | 4 | 376 | 10 | 382 | Lipid-A-disaccharide synthase OS=Burkholderia mallei (strain ATCC 23344) OX=243160 GN=lpxB PE=3 SV=1 |
| A1V555 | 8.69e-121 | 4 | 376 | 10 | 382 | Lipid-A-disaccharide synthase OS=Burkholderia mallei (strain SAVP1) OX=320388 GN=lpxB PE=3 SV=1 |
| Q3JR42 | 1.23e-120 | 4 | 376 | 10 | 382 | Lipid-A-disaccharide synthase OS=Burkholderia pseudomallei (strain 1710b) OX=320372 GN=lpxB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000053 | 0.000001 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |