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CAZyme Information: MGYG000002487_02613

You are here: Home > Sequence: MGYG000002487_02613

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Gordonibacter pamelaeae
Lineage Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Eggerthellaceae; Gordonibacter; Gordonibacter pamelaeae
CAZyme ID MGYG000002487_02613
CAZy Family GH73
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
554 57062.94 8.2695
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002487 3399341 Isolate United States North America
Gene Location Start: 169579;  End: 171243  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002487_02613.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH73 277 426 1.8e-23 0.9921875

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00877 NLPC_P60 5.31e-26 456 545 1 96
NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.
COG0791 Spr 3.16e-25 447 542 78 182
Cell wall-associated hydrolase, NlpC family [Cell wall/membrane/envelope biogenesis].
NF033742 NlpC_p60_RipB 4.54e-20 442 544 75 183
NlpC/P60 family peptidoglycan endopeptidase RipB.
COG1705 FlgJ 2.29e-19 276 431 49 189
Flagellum-specific peptidoglycan hydrolase FlgJ [Cell wall/membrane/envelope biogenesis, Cell motility].
PRK13914 PRK13914 4.49e-16 445 534 367 460
invasion associated endopeptidase.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BCA87931.1 7.52e-170 11 552 11 546
ACV54766.1 6.05e-166 11 551 3 533
BCS56195.1 7.02e-165 232 552 224 545
BAK43713.1 5.46e-164 217 551 188 522
BAK44675.1 5.46e-164 217 551 188 522

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6B8C_A 4.97e-16 445 541 29 130
Crystalstructure of NlpC/p60 domain of peptidoglycan hydrolase SagA [Enterococcus faecium]
3PBI_A 7.40e-12 442 528 83 185
ChainA, Invasion Protein [Mycobacterium tuberculosis]
2XIV_A 9.21e-12 442 540 78 192
Structureof Rv1477, hypothetical invasion protein of Mycobacterium tuberculosis [Mycobacterium tuberculosis H37Rv]
3NE0_A 1.00e-11 442 540 83 197
Structureand functional regulation of RipA, a mycobacterial enzyme essential for daughter cell separation [Mycobacterium tuberculosis H37Rv]
3PBC_A 1.00e-11 442 540 83 197
ChainA, Invasion Protein [Mycobacterium tuberculosis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P9WHU3 1.25e-14 444 538 273 369
Probable endopeptidase Rv2190c OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=Rv2190c PE=3 SV=1
P67474 1.25e-14 444 538 273 369
Probable endopeptidase Mb2213c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=BQ2027_MB2213C PE=3 SV=1
P9WHU2 1.25e-14 444 538 273 369
Probable endopeptidase MT2245 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT2245 PE=3 SV=1
Q8NNK6 2.13e-13 447 541 101 197
Probable endopeptidase Cgl2188 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=Cgl2188 PE=3 SV=1
A4QFQ3 2.21e-13 447 541 103 199
Probable endopeptidase cgR_2070 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=cgR_2070 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000058 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      download full data without filtering help

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