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CAZyme Information: MGYG000002466_02670

You are here: Home > Sequence: MGYG000002466_02670

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Yersinia frederiksenii
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia frederiksenii
CAZyme ID MGYG000002466_02670
CAZy Family PL38
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
442 MGYG000002466_8|CGC1 49838.82 8.9085
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002466 4803605 Isolate Finland Europe
Gene Location Start: 201393;  End: 202721  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002466_02670.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL38 95 374 1.3e-112 0.996415770609319

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam05426 Alginate_lyase 1.30e-103 94 374 1 274
Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold.
PRK00325 algL 2.88e-04 268 346 194 272
polysaccharide lyase.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ATM96598.1 0.0 6 442 1 437
QHB33315.1 5.25e-249 34 442 25 433
AHM73123.2 4.30e-248 15 442 6 433
QAX79259.1 1.23e-247 15 442 6 433
AOF30951.1 2.77e-247 6 442 4 436

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3NFV_A 1.72e-68 76 379 29 333
Crystalstructure of an alginate lyase (BACOVA_01668) from Bacteroides ovatus at 1.95 A resolution [Bacteroides ovatus ATCC 8483],3NNB_A Crystal structure of an alginate lyase (BACOVA_01668) from Bacteroides ovatus at 1.60 A resolution [Bacteroides ovatus ATCC 8483]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.049869 0.869938 0.078471 0.000576 0.000500 0.000621

TMHMM  Annotations      download full data without filtering help

start end
17 39