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CAZyme Information: MGYG000002427_00347
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Campylobacter_A concisus_E | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Campylobacterota; Campylobacteria; Campylobacterales; Campylobacteraceae; Campylobacter_A; Campylobacter_A concisus_E | |||||||||||
| CAZyme ID | MGYG000002427_00347 | |||||||||||
| CAZy Family | PL1 | |||||||||||
| CAZyme Description | Pectate lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 144825; End: 145643 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 143 | 264 | 1.2e-32 | 0.5774647887323944 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| smart00656 | Amb_all | 1.75e-17 | 152 | 227 | 14 | 80 | Amb_all domain. |
| COG3866 | PelB | 1.99e-13 | 138 | 227 | 85 | 165 | Pectate lyase [Carbohydrate transport and metabolism]. |
| pfam00544 | Pec_lyase_C | 5.27e-08 | 150 | 251 | 30 | 118 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QPI00741.1 | 3.38e-168 | 1 | 249 | 1 | 249 |
| QPH98945.1 | 3.38e-168 | 1 | 249 | 1 | 249 |
| QPH85838.1 | 4.30e-164 | 1 | 249 | 1 | 249 |
| AVX44674.1 | 7.38e-164 | 1 | 252 | 1 | 252 |
| QPI07285.1 | 1.01e-162 | 1 | 249 | 1 | 249 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1VBL_A | 1.41e-21 | 33 | 227 | 13 | 209 | Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47] |
| 5AMV_A | 1.01e-19 | 44 | 227 | 23 | 203 | Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168] |
| 2NZM_A | 1.01e-19 | 44 | 227 | 23 | 203 | ChainA, Pectate lyase [Bacillus subtilis],2O04_A Chain A, Pectate lyase [Bacillus subtilis],2O0V_A Chain A, Pectate lyase [Bacillus subtilis],2O0W_A Chain A, Pectate lyase [Bacillus subtilis],2O17_A Chain A, Pectate lyase [Bacillus subtilis],2O1D_A Chain A, Pectate lyase [Bacillus subtilis] |
| 1BN8_A | 1.15e-19 | 44 | 227 | 44 | 224 | BacillusSubtilis Pectate Lyase [Bacillus subtilis] |
| 2BSP_A | 1.15e-19 | 44 | 227 | 44 | 224 | ChainA, PROTEIN (PECTATE LYASE) [Bacillus subtilis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P39116 | 6.29e-19 | 44 | 227 | 44 | 224 | Pectate lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pel PE=1 SV=1 |
| P04960 | 4.66e-16 | 84 | 227 | 40 | 183 | Pectate lyase E OS=Dickeya chrysanthemi OX=556 GN=pelE PE=1 SV=1 |
| P18209 | 7.59e-15 | 142 | 227 | 104 | 189 | Pectate lyase D OS=Dickeya chrysanthemi OX=556 GN=pelD PE=3 SV=1 |
| P0C1A4 | 2.00e-14 | 142 | 227 | 116 | 201 | Pectate lyase E OS=Dickeya chrysanthemi OX=556 GN=pelE PE=3 SV=1 |
| P0C1A5 | 2.00e-14 | 142 | 227 | 116 | 201 | Pectate lyase E OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelE PE=3 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000243 | 0.999039 | 0.000185 | 0.000181 | 0.000170 | 0.000151 |