CAZyme Information: MGYG000002406_01886

Basic Information

• Species: Corynebacterium pacaense
• Lineage: Bacteria; Actinobacteriota; Actinomycetia; Mycobacteriales; Mycobacteriaceae; Corynebacterium; Corynebacterium pacaense
• CAZyme ID: MGYG000002406_01886
• CAZy Family: CBM48
• CAZyme Description: 1,4-alpha-glucan branching enzyme GlgB

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
728	MGYG000002406_13|CGC3	81687.04	4.7238

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002406	3028764	Isolate	not provided	not provided

• Gene Location: Start: 499425; End: 501611 Strand: +

Full Sequence      

MSTDHLHIPEADMERLRNCNHYNPHAFYGWHATESGSVVRTRQIGAEKVELLIDGGSIDM
VPLGDDVFAAELEDRRAADYRLMVTWPGKPSTIIADPYHFLPTLGELDIYLISEGRHERL
WEVLGANVKTYDTTLGSVKGTAFAVWAPNAIGVAVVGDFNGWNASQHPMRSMGGSGVWEL
FIPGVGDGATYKFALQTKQGHRRDKADPLAKRAELPPATASIVAESSYEWNDDQWLRTRE
STDVASIPMSVYEVHLGSWRWGRGYSDLATELVDYVVDLGYTHVEFMPVSEHPFGGSWGY
QVSGYYAPTARWGTPDEFRKLVDAFHARGIGVIMDWVPAHFPKDDWALARFDGEALYEHP
DWRRGEQRDWGTLVFNFGRNEVRNFLVANAVYWINEFHIDGLRVDAVASMLYLDYSREQG
EWEPNIYGGRENLEAVQFIQELNATVLRLHPGALTIAEESTSWPGVTAPTWEGGLGFSLK
WNMGWMNDTLEYFSHDPVHRSFHHNDLTFSLVYAFSERFVLPISHDEVVHGKGSLWNRMP
GDTWNKAAGLRTLLAYMWAHPGKKLLFMGQELGQQDEWSEGTELPWGIFDGWQGEYHLAI
QELVRDLNGVYSGSPALYSQDFSGEGFSWNKADDAAGNFLSFLRYGTDGSRMLCVFNLSG
TPQSAYRLGVPDAGNWRLVLNTDTASYQGAGNDLAPSITAVDAGWDGFPHSLTLDSPAMS
AQFYSWEG

Enzyme Prediction     

EC	2.4.1.18

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH13	274	574	3.2e-163	0.9966777408637874
CBM48	124	213	7.9e-18	0.8947368421052632

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
PRK05402	PRK05402	0.0	8	728	1	725	1,4-alpha-glucan branching protein GlgB.
PRK14705	PRK14705	0.0	6	724	501	1220	glycogen branching enzyme; Provisional
PRK12313	PRK12313	0.0	102	728	5	629	1,4-alpha-glucan branching protein GlgB.
PRK12568	PRK12568	0.0	39	720	42	722	glycogen branching enzyme; Provisional
COG0296	GlgB	0.0	100	726	2	628	1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AGG66580.1	0.0	1	728	1	731
ALC05620.1	0.0	5	727	8	730
BAU95608.1	0.0	5	725	8	728
AGN21988.1	0.0	5	725	8	728
BAF54283.1	0.0	5	725	8	728

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3K1D_A	9.80e-311	4	721	1	716	Crystalstructure of glycogen branching enzyme synonym: 1,4-alpha-D-glucan:1,4-alpha-D-GLUCAN 6-glucosyl-transferase from mycobacterium tuberculosis H37RV [Mycobacterium tuberculosis H37Rv]
5GQW_A	1.08e-223	68	720	93	767	Crystalstructure of branching enzyme W610N mutant from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142],5GQX_A Crystal structure of branching enzyme W610N mutant from Cyanothece sp. ATCC 51142 in complex with maltoheptaose [Crocosphaera subtropica ATCC 51142]
5GR5_A	1.08e-223	68	720	93	767	Crystalstructure of branching enzyme W610A mutant from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142]
5GQU_A	2.17e-223	68	720	93	767	Crystalstructure of branching enzyme from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142],5GQV_A Crystal structure of branching enzyme from Cyanothece sp. ATCC 51142 in complex with maltohexaose [Crocosphaera subtropica ATCC 51142],5GQY_A Crystal structure of branching enzyme from Cyanothece sp. ATCC 51142 in complex with maltoheptaose [Crocosphaera subtropica ATCC 51142]
5GR2_A	3.07e-223	68	720	93	767	Crystalstructure of branching enzyme L541A mutant from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142],5GR4_A Crystal structure of branching enzyme L541A mutant from Cyanothece sp. ATCC 51142 in complex with maltoheptaose [Crocosphaera subtropica ATCC 51142]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q8NR40	0.0	5	725	8	728	1,4-alpha-glucan branching enzyme GlgB OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=glgB PE=3 SV=1
Q0SGR9	0.0	11	727	14	731	1,4-alpha-glucan branching enzyme GlgB OS=Rhodococcus jostii (strain RHA1) OX=101510 GN=glgB PE=3 SV=1
Q6NHR6	0.0	13	727	15	731	1,4-alpha-glucan branching enzyme GlgB OS=Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) OX=257309 GN=glgB PE=3 SV=1
Q8FQ12	0.0	2	728	5	731	1,4-alpha-glucan branching enzyme GlgB OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) OX=196164 GN=glgB PE=3 SV=1
Q5Z0W8	4.36e-317	8	714	27	729	1,4-alpha-glucan branching enzyme GlgB OS=Nocardia farcinica (strain IFM 10152) OX=247156 GN=glgB PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000057	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002406_01886.