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CAZyme Information: MGYG000002400_00676

You are here: Home > Sequence: MGYG000002400_00676

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Staphylococcus lugdunensis
Lineage Bacteria; Firmicutes; Bacilli; Staphylococcales; Staphylococcaceae; Staphylococcus; Staphylococcus lugdunensis
CAZyme ID MGYG000002400_00676
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
442 MGYG000002400_17|CGC2 48651.36 7.3148
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002400 2523999 Isolate not provided not provided
Gene Location Start: 259626;  End: 260954  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002400_00676.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
NF033598 elast_bind_EbpS 1.98e-45 4 441 1 466
elastin-binding protein EbpS. The elastin-binding protein EbpS is an adhesin described in Staphylococcus aureus, with orthologs found in many additional staphylococcal species. EbpS is a membrane protein that lacks an N-terminal signal peptide region, has extensive regions low-complexity sequence rich in Asn and Gln, and has a C-terminal LysM domain.
cd00118 LysM 1.54e-04 392 440 1 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
pfam01476 LysM 1.80e-04 394 441 1 43
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QOR95347.1 7.32e-133 1 442 2 443
ARJ11470.1 7.32e-133 1 442 2 443
QRF15479.1 7.32e-133 1 442 2 443
SQI93859.1 5.71e-132 1 442 1 442
QEX28683.1 5.90e-132 1 442 2 443

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q5HP65 2.26e-19 261 442 272 460
Probable elastin-binding protein EbpS OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 GN=ebpS PE=4 SV=1
Q8CP59 2.26e-19 261 442 272 460
Probable elastin-binding protein EbpS OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=ebpS PE=4 SV=2
Q4L6I5 5.62e-19 260 442 324 539
Probable elastin-binding protein EbpS OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=ebpS PE=4 SV=1
Q53630 1.55e-17 262 441 309 486
Elastin-binding protein EbpS OS=Staphylococcus aureus OX=1280 GN=ebpS PE=1 SV=4
Q6GGT1 1.55e-17 262 441 309 486
Elastin-binding protein EbpS OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=ebpS PE=3 SV=3

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000065 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      download full data without filtering help

start end
273 295