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CAZyme Information: MGYG000002363_04908

You are here: Home > Sequence: MGYG000002363_04908

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Raoultella ornithinolytica
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Raoultella; Raoultella ornithinolytica
CAZyme ID MGYG000002363_04908
CAZy Family PL9
CAZyme Description Pectate disaccharide-lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
723 MGYG000002363_24|CGC10 78647.18 6.1358
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002363 5677722 Isolate United Republic of Tanzania Africa
Gene Location Start: 488293;  End: 490464  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.9

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL9 379 721 3.6e-106 0.968

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam13229 Beta_helix 4.85e-08 450 611 1 142
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AOO58274.1 0.0 1 723 1 723
BDA57547.1 0.0 1 723 1 723
QLK24025.1 0.0 1 723 1 723
QCK77676.1 0.0 1 723 1 723
QHW71226.1 0.0 1 723 1 723

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1RU4_A 1.66e-31 383 637 18 298
ChainA, Pectate lyase [Dickeya chrysanthemi]
5OLQ_A 1.92e-12 379 662 2 357
Rhamnogalacturonanlyase [Bacteroides thetaiotaomicron],5OLQ_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLQ_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLS_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P22751 7.08e-289 23 680 29 689
Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1
P0C1A6 4.95e-32 383 701 43 379
Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1
P0C1A7 1.36e-30 383 637 43 323
Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000274 0.998999 0.000224 0.000169 0.000168 0.000152

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002363_04908.