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CAZyme Information: MGYG000002170_01849

You are here: Home > Sequence: MGYG000002170_01849

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Clostridium_Q;
CAZyme ID MGYG000002170_01849
CAZy Family GH0
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
426 47100.92 4.6053
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002170 2623587 MAG Denmark Europe
Gene Location Start: 1273;  End: 2553  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002170_01849.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam01471 PG_binding_1 2.36e-13 350 411 1 57
Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.
COG3409 PGRP 6.38e-09 348 411 42 102
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis].
COG3409 PGRP 5.70e-08 340 413 116 185
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis].
COG2989 YcbB 5.62e-04 341 424 228 307
Murein L,D-transpeptidase YcbB/YkuD [Cell wall/membrane/envelope biogenesis].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QJU21247.1 2.62e-215 17 424 9 415
ASN94441.1 2.62e-215 17 424 9 415
QRP40879.1 2.62e-215 17 424 9 415
QIX92999.1 1.51e-214 17 424 9 415
ANU48790.1 3.05e-214 17 424 9 415

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000034 0.000016 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002170_01849.