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CAZyme Information: MGYG000001940_02037
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Ruminococcus sp002438605 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus; Ruminococcus sp002438605 | |||||||||||
| CAZyme ID | MGYG000001940_02037 | |||||||||||
| CAZy Family | CBM22 | |||||||||||
| CAZyme Description | Endo-1,4-beta-xylanase Y | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 3891; End: 5789 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH10 | 193 | 532 | 3.9e-99 | 0.9933993399339934 |
| CBM22 | 39 | 166 | 5.8e-28 | 0.9770992366412213 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam00331 | Glyco_hydro_10 | 1.39e-104 | 194 | 532 | 1 | 310 | Glycosyl hydrolase family 10. |
| smart00633 | Glyco_10 | 1.73e-102 | 269 | 530 | 20 | 263 | Glycosyl hydrolase family 10. |
| COG3693 | XynA | 9.55e-69 | 211 | 532 | 37 | 339 | Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism]. |
| pfam02018 | CBM_4_9 | 2.19e-15 | 38 | 170 | 2 | 134 | Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. |
| cd14256 | Dockerin_I | 1.41e-10 | 566 | 624 | 1 | 56 | Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| CBL16579.1 | 1.35e-286 | 1 | 620 | 1 | 621 |
| CAB65753.1 | 8.56e-191 | 36 | 534 | 30 | 532 |
| CAL91979.1 | 2.36e-178 | 40 | 534 | 29 | 525 |
| CAL91978.1 | 2.22e-176 | 71 | 534 | 3 | 465 |
| ADU21885.1 | 4.48e-172 | 7 | 534 | 7 | 540 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2W5F_A | 3.19e-102 | 45 | 530 | 30 | 524 | ChainA, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus],2W5F_B Chain B, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus] |
| 2WYS_A | 1.14e-98 | 45 | 530 | 30 | 524 | ChainA, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus],2WYS_B Chain B, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus],2WZE_A Chain A, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus],2WZE_B Chain B, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus] |
| 6FHE_A | 1.07e-63 | 190 | 530 | 9 | 338 | Highlyactive enzymes by automated modular backbone assembly and sequence design [synthetic construct] |
| 3W24_A | 3.73e-63 | 190 | 532 | 5 | 325 | Thehigh-resolution crystal structure of TsXylA, intracellular xylanase from Thermoanaerobacterium saccharolyticum JW/SL-YS485 [Thermoanaerobacterium saccharolyticum JW/SL-YS485] |
| 7NL2_A | 4.20e-63 | 191 | 538 | 9 | 345 | ChainA, Beta-xylanase [Pseudothermotoga thermarum DSM 5069],7NL2_B Chain B, Beta-xylanase [Pseudothermotoga thermarum DSM 5069] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P51584 | 2.42e-97 | 45 | 530 | 41 | 535 | Endo-1,4-beta-xylanase Y OS=Acetivibrio thermocellus OX=1515 GN=xynY PE=1 SV=1 |
| P29126 | 1.31e-92 | 193 | 527 | 629 | 946 | Bifunctional endo-1,4-beta-xylanase XylA OS=Ruminococcus flavefaciens OX=1265 GN=xynA PE=3 SV=1 |
| Q60042 | 1.56e-81 | 31 | 530 | 192 | 685 | Endo-1,4-beta-xylanase A OS=Thermotoga neapolitana OX=2337 GN=xynA PE=1 SV=1 |
| Q60037 | 1.05e-79 | 37 | 530 | 203 | 689 | Endo-1,4-beta-xylanase A OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=xynA PE=1 SV=1 |
| P36917 | 5.16e-71 | 39 | 532 | 197 | 674 | Endo-1,4-beta-xylanase A OS=Thermoanaerobacterium saccharolyticum OX=28896 GN=xynA PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.002823 | 0.606625 | 0.388944 | 0.001083 | 0.000279 | 0.000212 |