logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001880_00026

You are here: Home > Sequence: MGYG000001880_00026

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia_A; Christensenellales; HGM11327; HGM11327;
CAZyme ID MGYG000001880_00026
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
715 MGYG000001880_2|CGC1 79665.74 5.0807
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001880 1865592 MAG Denmark Europe
Gene Location Start: 1737;  End: 3884  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001880_00026.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 152 410 6.1e-41 0.7538461538461538

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.81e-10 174 371 227 427
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 2.02e-06 187 395 87 320
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02793 PLN02793 4.25e-05 164 403 145 391
Probable polygalacturonase
PLN03010 PLN03010 0.002 190 266 162 240
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BCJ93866.1 7.86e-202 9 714 1 715
BCJ98361.1 1.48e-195 9 714 1 715
SDS06655.1 3.46e-51 5 403 49 463
ALJ04708.1 1.29e-50 30 392 85 455
APA66227.1 4.71e-50 30 403 69 450

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1BHE_A 6.54e-07 175 374 144 361
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q94AJ5 4.90e-08 176 403 166 391
Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana OX=3702 GN=At1g80170 PE=1 SV=1
P26509 3.86e-06 175 374 170 387
Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1
P18192 8.93e-06 175 374 170 387
Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000047 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001880_00026.