logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001703_01468

You are here: Home > Sequence: MGYG000001703_01468

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Vibrio fluvialis
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Vibrionaceae; Vibrio; Vibrio fluvialis
CAZyme ID MGYG000001703_01468
CAZy Family CBM50
CAZyme Description putative L,D-transpeptidase YcfS
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
308 MGYG000001703_5|CGC4 34192.35 5.2415
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001703 4750671 Isolate Bangladesh Asia
Gene Location Start: 113933;  End: 114859  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001703_01468.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK10260 PRK10260 4.94e-95 2 297 5 305
L,D-transpeptidase; Provisional
PRK10190 PRK10190 3.14e-86 2 305 1 310
L,D-transpeptidase; Provisional
COG1376 ErfK 2.73e-50 3 234 5 232
Lipoprotein-anchoring transpeptidase ErfK/SrfK [Cell wall/membrane/envelope biogenesis].
cd16913 YkuD_like 2.26e-39 96 231 2 121
L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.
pfam17969 Ldt_C 1.37e-24 234 297 1 67
L,D-transpeptidase C-terminal domain. This is the C-terminal domain found in d-transpeptidases (Ldt) homologues from E.coli. Three of these enzymes (YbiS, ErfK, YcfS) have been shown to cross-link Braun's lipoprotein to the peptidoglycan (PG), while the other two (YnhG, YcbB) form direct meso-diaminopimelate (DAP-DAP, or 3-3) cross-links within the PG. Family members include erfK (ldtA), ybiS (ldtB), ycfS (ldtC), and ynhG (ldtE).

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUY00823.1 4.90e-170 4 302 4 301
QPC55488.1 4.90e-170 4 302 4 301
QTV10206.1 4.90e-170 4 302 4 301
QLK92159.1 4.90e-170 4 302 4 301
QTV04013.1 4.90e-170 4 302 4 301

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4LZH_A 2.11e-72 21 297 3 284
ChainA, L,D-transpeptidase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P75954 6.93e-95 10 297 17 310
Probable L,D-transpeptidase YcfS OS=Escherichia coli (strain K12) OX=83333 GN=ycfS PE=1 SV=1
P76193 4.05e-84 2 299 6 304
Probable L,D-transpeptidase YnhG OS=Escherichia coli (strain K12) OX=83333 GN=ynhG PE=1 SV=1
P39176 2.93e-78 2 299 1 304
Probable L,D-transpeptidase ErfK/SrfK OS=Escherichia coli (strain K12) OX=83333 GN=erfK PE=1 SV=2
P0AAX8 4.16e-77 2 257 5 260
Probable L,D-transpeptidase YbiS OS=Escherichia coli (strain K12) OX=83333 GN=ybiS PE=1 SV=1
P0AAX9 4.16e-77 2 257 5 260
Probable L,D-transpeptidase YbiS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=ybiS PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000269 0.999007 0.000180 0.000183 0.000183 0.000163

TMHMM  Annotations      download full data without filtering help

start end
5 24