logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001683_02441

You are here: Home > Sequence: MGYG000001683_02441

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Frisingicoccus;
CAZyme ID MGYG000001683_02441
CAZy Family GH10
CAZyme Description Anti-sigma-I factor RsgI6
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
439 52837.55 5.2019
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001683 2591996 MAG United States North America
Gene Location Start: 221;  End: 1540  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001683_02441.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH10 57 381 1.6e-46 0.9702970297029703

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
smart00633 Glyco_10 3.44e-28 99 380 3 263
Glycosyl hydrolase family 10.
COG3693 XynA 1.66e-19 99 380 69 337
Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AVM44415.1 5.38e-104 18 436 20 437
QMW04637.1 4.99e-103 19 428 31 435
AEI51978.1 9.97e-99 19 430 31 432
QHV94149.1 2.44e-97 15 427 27 433
QIP12711.1 3.45e-97 15 427 27 433

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4PMY_A 6.13e-13 98 376 26 291
Crystalstructure of GH10 endo-b-1,4-xylanase (XynB) from Xanthomonas axonopodis pv citri complexed with xylose [Xanthomonas citri pv. citri str. 306],4PMY_B Crystal structure of GH10 endo-b-1,4-xylanase (XynB) from Xanthomonas axonopodis pv citri complexed with xylose [Xanthomonas citri pv. citri str. 306],4PMZ_A Crystal structure of GH10 endo-b-1,4-xylanase (XynB) from Xanthomonas axonopodis pv citri complexed with xylobiose [Xanthomonas citri pv. citri str. 306],4PMZ_B Crystal structure of GH10 endo-b-1,4-xylanase (XynB) from Xanthomonas axonopodis pv citri complexed with xylobiose [Xanthomonas citri pv. citri str. 306]
4PN2_A 6.25e-13 98 376 27 292
Crystalstructure of GH10 endo-b-1,4-xylanase (XynB) from Xanthomonas axonopodis pv citri complexed with xylotriose [Xanthomonas citri pv. citri str. 306],4PN2_B Crystal structure of GH10 endo-b-1,4-xylanase (XynB) from Xanthomonas axonopodis pv citri complexed with xylotriose [Xanthomonas citri pv. citri str. 306]
4PMX_A 6.30e-13 98 376 27 292
Crystalstructure of GH10 endo-b-1,4-xylanase (XynB) from Xanthomonas axonopodis pv citri in the native form [Xanthomonas citri pv. citri str. 306]
1XYZ_A 9.19e-09 125 380 90 340
ChainA, 1,4-BETA-D-XYLAN-XYLANOHYDROLASE [Acetivibrio thermocellus],1XYZ_B Chain B, 1,4-BETA-D-XYLAN-XYLANOHYDROLASE [Acetivibrio thermocellus]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A3DH97 6.26e-26 21 419 382 737
Anti-sigma-I factor RsgI6 OS=Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=rsgI6 PE=1 SV=1
P10478 9.64e-08 125 380 580 830
Endo-1,4-beta-xylanase Z OS=Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=xynZ PE=1 SV=3

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000040 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001683_02441.