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CAZyme Information: MGYG000001408_02645

You are here: Home > Sequence: MGYG000001408_02645

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Brevibacterium senegalense
Lineage Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Brevibacteriaceae; Brevibacterium; Brevibacterium senegalense
CAZyme ID MGYG000001408_02645
CAZy Family AA3
CAZyme Description Choline oxidase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
523 MGYG000001408_8|CGC2 57272.95 4.6691
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001408 3398887 Isolate not provided not provided
Gene Location Start: 150825;  End: 152396  Strand: +

Full Sequence      Download help

MKTLDTFDYI  VIGGGSAGAA  VAARLSEDPA  VTVGLLEAGP  TDVDDPAVLD  LESWPALLES60
GYDWDYPIEP  QERGNSFMRH  ARAKVLGGCS  SHNSCIAFWA  PREDLDAWAH  EYGAEGWDAD120
TLYPLYQRLE  TNEDPEPHHG  TDGPVHIMNV  PQDDKSGVNL  LDAAEQAGLP  RTRFNTGETV180
VDGAGFFQIN  RRADGTRASS  SVSYLHPHLD  RENLSILTDT  QVTRIELDDD  LRATGVHVVA240
DIHGRTARIG  ATREVIVSAG  AIDSPKLLML  SGIGPADHLR  EVGVEVRVDS  PGVGSNLQDH300
PEAVIRWEAK  KPMARTSTQW  WEIGLFHATE  EGLDRPDLMM  HYGTVPFDMH  TARQGYPSAE360
DEFCLTPNVT  RARSRGTVRL  RSRDFRDKPR  VDPRYFTDPE  GHDLRVAIAG  IRLAREIVAQ420
PAMAEWASRE  LSPGIEAQTD  QEIGDYVLAT  HNTVYHPVGT  VRMGPVDDDL  SPLDPQLRVK480
GVTGLRVADA  SVMPEIVTVN  PNITTMMIGE  KASDLIAADR  AHA523

Enzyme Prediction      help

No EC number prediction in MGYG000001408_02645.

CAZyme Signature Domains help

Created with Snap2652781041301561832092352612873133393663924184444704966329AA3
Family Start End Evalue family coverage
AA3 6 329 6.1e-98 0.6038732394366197

CDD Domains      download full data without filtering help

Created with Snap2652781041301561832092352612873133393663924184444704962516PRK021066523BetA373512GMC_oxred_C74302GMC_oxred_N6509PLN02785
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK02106 PRK02106 1.78e-143 2 516 1 531
choline dehydrogenase; Validated
COG2303 BetA 5.43e-122 6 523 7 540
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
pfam05199 GMC_oxred_C 7.12e-44 373 512 2 143
GMC oxidoreductase. This domain found associated with pfam00732.
pfam00732 GMC_oxred_N 1.16e-38 74 302 15 218
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
PLN02785 PLN02785 1.57e-24 6 509 55 569
Protein HOTHEAD

CAZyme Hits      help

Created with Snap2652781041301561832092352612873133393663924184444704966519ATY64015.1|AA3_25519QLI67559.1|AA3_25519QUC21054.1|AA3_25519QPH10566.1|AA3_25519QGI77692.1|AA3_2
Hit ID E-Value Query Start Query End Hit Start Hit End
ATY64015.1 8.42e-133 6 519 13 533
QLI67559.1 3.26e-132 5 519 12 532
QUC21054.1 1.07e-130 5 519 12 533
QPH10566.1 1.21e-129 5 519 12 533
QGI77692.1 3.20e-129 5 519 12 533

PDB Hits      download full data without filtering help

Created with Snap26527810413015618320923526128731333936639241844447049675212JBV_A75213NNE_A75213LJP_A75166ZH7_A75166YS2_AAA
Hit ID E-Value Query Start Query End Hit Start Hit End Description
2JBV_A 6.21e-284 7 521 14 531
Crystalstructure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],2JBV_B Crystal structure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],4MJW_A Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis],4MJW_B Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis]
3NNE_A 1.78e-283 7 521 14 531
Crystalstructure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_B Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_C Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_D Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_E Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_F Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_G Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_H Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis]
3LJP_A 2.52e-283 7 521 14 531
ChainA, Choline oxidase [Arthrobacter globiformis],3LJP_B Chain B, Choline oxidase [Arthrobacter globiformis]
6ZH7_A 1.16e-65 7 516 8 560
ChainA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
6YS2_AAA 1.16e-65 7 516 8 560
ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis]

Swiss-Prot Hits      download full data without filtering help

Created with Snap2652781041301561832092352612873133393663924184444704967521sp|Q7X2H8|CHOX_ARTGO2521sp|Q8NE62|CHDH_HUMAN7516sp|Q47944|SDH_GLUOY5516sp|Q8BJ64|CHDH_MOUSE8516sp|A6U6Y8|BETA_SINMW
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q7X2H8 3.40e-283 7 521 14 531
Choline oxidase OS=Arthrobacter globiformis OX=1665 GN=codA PE=1 SV=1
Q8NE62 5.34e-88 2 521 36 576
Choline dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=CHDH PE=1 SV=2
Q47944 8.12e-88 7 516 5 527
L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans OX=442 PE=3 SV=1
Q8BJ64 1.55e-87 5 516 41 573
Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1
A6U6Y8 1.41e-86 8 516 4 525
Oxygen-dependent choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419) OX=366394 GN=betA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.999908 0.000114 0.000007 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001408_02645.