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CAZyme Information: MGYG000001359_01925
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Bilophila wadsworthia | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Desulfobacterota; Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae; Bilophila; Bilophila wadsworthia | |||||||||||
| CAZyme ID | MGYG000001359_01925 | |||||||||||
| CAZy Family | GH23 | |||||||||||
| CAZyme Description | Elongation factor 4 | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 2132209; End: 2135286 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK05306 | infB | 0.0 | 318 | 1024 | 58 | 746 | translation initiation factor IF-2; Validated |
| TIGR00487 | IF-2 | 0.0 | 439 | 1025 | 1 | 586 | translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. [Protein synthesis, Translation factors] |
| CHL00189 | infB | 0.0 | 444 | 1025 | 160 | 742 | translation initiation factor 2; Provisional |
| COG0532 | InfB | 0.0 | 522 | 1025 | 1 | 507 | Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]. |
| cd01887 | IF2_eIF5B | 4.32e-97 | 527 | 690 | 1 | 169 | Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AGL64345.2 | 6.68e-189 | 454 | 1020 | 287 | 854 |
| CAE6204650.1 | 1.19e-12 | 530 | 730 | 751 | 968 |
| AIA01457.1 | 3.62e-07 | 527 | 652 | 11 | 138 |
| AKA01905.1 | 4.81e-07 | 527 | 652 | 11 | 138 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3JCJ_f | 1.83e-206 | 418 | 1025 | 286 | 889 | Structuresof ribosome-bound initiation factor 2 reveal the mechanism of subunit association [Escherichia coli],3JCN_b Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I [Escherichia coli],5ME0_W Chain W, Translation initiation factor IF-2 [Escherichia coli K-12],5ME1_W Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112 [Escherichia coli K-12] |
| 6O7K_f | 4.65e-193 | 525 | 1025 | 9 | 508 | 30Sinitiation complex [Escherichia coli],6O9K_z 70S initiation complex [Escherichia coli] |
| 1ZO1_I | 2.78e-192 | 525 | 1020 | 3 | 497 | IF2,IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex [Escherichia coli] |
| 3J4J_A | 3.49e-159 | 450 | 1020 | 4 | 568 | Modelof full-length T. thermophilus Translation Initiation Factor 2 refined against its cryo-EM density from a 30S Initiation Complex map [Thermus thermophilus HB8] |
| 5LMV_a | 5.25e-159 | 450 | 1023 | 4 | 571 | Structureof bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III) [Thermus thermophilus HB8] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q30WJ0 | 0.0 | 1 | 1025 | 1 | 983 | Translation initiation factor IF-2 OS=Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20) OX=207559 GN=infB PE=3 SV=1 |
| Q72ER1 | 0.0 | 1 | 1025 | 1 | 1079 | Translation initiation factor IF-2 OS=Desulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / NCIMB 8303 / VKM B-1760 / Hildenborough) OX=882 GN=infB PE=3 SV=1 |
| B8J1Y4 | 0.0 | 1 | 1025 | 1 | 997 | Translation initiation factor IF-2 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB) OX=525146 GN=infB PE=3 SV=1 |
| A1VG83 | 0.0 | 1 | 1025 | 1 | 1079 | Translation initiation factor IF-2 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) OX=391774 GN=infB PE=3 SV=1 |
| Q1MQY8 | 0.0 | 1 | 1025 | 1 | 961 | Translation initiation factor IF-2 OS=Lawsonia intracellularis (strain PHE/MN1-00) OX=363253 GN=infB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000031 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |