CAZyme Information: MGYG000001328_00534

Basic Information

• Species: Clostridium tertium
• Lineage: Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium tertium
• CAZyme ID: MGYG000001328_00534
• CAZy Family: GH39
• CAZyme Description: HTH-type transcriptional activator RhaR

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
688	MGYG000001328_3|CGC5	81846.71	4.6462

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001328	3807822	Isolate	not provided	not provided

• Gene Location: Start: 225850; End: 227916 Strand: -

Full Sequence      

MRREYVSYPADTPIKITYANIREYPIHWHNSIEILYVLRGSINVTIDTDSFEVLEKELEI
INVDESHRIYSDEDNKVLIFHIDPYFFEKYYKDINNIFFYTNSTDDGAQEGEEYDLLRNF
LAKLLCEAVQKIDDYDKEIESILIDLLYHLINNFHYLTYEKEELKEKTEQLARYHRISKY
IFNNYDSNITLQEIAKKEFLSPHYLSHEIKYATGYSFTDLVNQTRVEESVKLLLDSDLSI
SDISDEVGFSHVRYLNKNFKNYYGCTPLQYRKKNKLTEKELEAIKNIEILNLEDALEYLS
SELDDYERFNYENKLWKIHVNMDDSLGEFNKDYSEVINLDDAFDLLLEDNKDILEEIQEE
LHFNYVRLENMFNSDMGVFPKADFYNWNKAKSVIEFLDYISLKPLILIDNTNFTFDKYKQ
VLTSFFEYFSEIDYIDVSEFKFQFTPIISEDIKKSLKSFLDEEYNLDVIENDFICDKSLN
KIYDTAYMLPYIIHNTLFNKNSLSFLRAFDVLEKEISLTNEVFIGAPGLVNDMGIRKPSY
YAYYLLSKLGNEIVAMENGYIVTKKDDEYCILLYSYNDELNDMQNFEDIFTKRGKRKIYK
RKISLNIENIKKSSRIITYEISERVGSSYNYWLSMGSPDRLNKEEKEILHKASFPKIEFK
YSKKNTILNIITELRGYAAKLILIKNIK

Enzyme Prediction     

No EC number prediction in MGYG000001328_00534.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH39	480	641	6.9e-19	0.35730858468677495

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG2207	AraC	1.27e-25	173	275	21	123	AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
smart00342	HTH_ARAC	1.74e-23	188	271	1	84	helix_turn_helix, arabinose operon control protein.
pfam12833	HTH_18	1.29e-19	194	273	1	81	Helix-turn-helix domain.
COG4753	YesN	2.53e-14	180	275	380	475	Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription].
PRK10371	PRK10371	4.69e-11	180	272	199	291	transcriptional regulator MelR.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ATD56640.1	0.0	1	688	1	689
QBJ75981.1	0.0	1	688	1	689
SLK21057.1	0.0	1	688	1	689
ATD55683.1	0.0	1	688	1	689
AYE35030.1	0.0	1	688	1	689

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6SWI_A	2.05e-13	176	278	9	112	TheC-terminal domain of AraT, a response regulator from Geobacillus stearothermophilus [Geobacillus stearothermophilus]
3LSG_A	2.86e-12	186	271	17	102	Thecrystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_B The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_C The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_D The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_E The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum]
3MKL_A	3.16e-07	176	274	11	108	Crystalstructure of DNA-binding transcriptional dual regulator from Escherichia coli K-12 [Escherichia coli K-12],3MKL_B Crystal structure of DNA-binding transcriptional dual regulator from Escherichia coli K-12 [Escherichia coli K-12]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q6GD21	1.92e-15	30	658	21	713	Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1
Q8NYT6	1.92e-15	30	658	21	713	Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1
Q99XB1	5.80e-15	30	658	21	713	Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1
Q7A882	5.80e-15	30	658	21	713	Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1
Q6GKK1	1.75e-14	30	658	21	713	Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000040	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001328_00534.