CAZyme Information: MGYG000001014_01016

Basic Information

• Species: Varibaculum timonense
• Lineage: Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Actinomycetaceae; Varibaculum; Varibaculum timonense
• CAZyme ID: MGYG000001014_01016
• CAZy Family: GH110
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1181		127868.06	9.3581

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001014	1848217	MAG	Bangladesh	Asia

• Gene Location: Start: 4041; End: 7586 Strand: -

Full Sequence      

MGASERFKKKRIGILIEDLDDVTIDGSGSLFMYHGKMTEFAAINSKKIKIQNVATDFATP
TVIDLAVEKVDSDTKTATFLVPKQYNYSLNGNDITWYSDSSPYSNQRYWTTKQSEFSYMQ
AYDASKQQTWRAGNPNSTIFANVTAIKETRTDNASHLKVTYSSSLNKLLKKGMYFQMRLL
DRDHPGMFIWKSKDVAIEKTQIGFLHGFGIVGQHSENITIDNVRFEAPAETGRSTSGFAD
FIQMSGTKGKIRITNSYFSNPHDDPINVHGTFNEVVEKIAANKIRVRFKHHETAGFPNYF
IGDQVEFSTKGNMITVPDSVRTVTAVDGPDGKGGIQGEGSGNLTDIILTFDKDIPAQIGV
NGTHVVENITYTPEVEISNNVFTATPTRGILVTTRKKVVIENNTFDGIGMAGIYISNDAQ
GWYESGPVRNLTIKNNIFLNGSSQAIFIQPTNPTVSETNTVHSNVNVTGNKFYILRAGAQ
NPAGNGRDAQRVLDAKSTKDLSFTDNTIWLQDPGILTLTSEQKIVPVGGSMRLLTSGSPM
TNTALYRLQGNKTVTIANNKYGQGLDTSIDVSQMDSANINISNDLAKTNGAVVTNPPTPP
TVTRYFVSSNPNVIKVDSEGVVYALSEGSATLTLTEVAGTGDKAVKRTSNPLTLQVSTTA
GAPQEIYSFTDKWSIETEDSAHQIKPKEFGFTSTYSSGGLYQEQQGKNILVGQVIDPESS
SDFEITVRQQGLTSSSWSDTGVYLYKDQNNYLAIQRKHRNGNIRKIAQVRESSAKAQETW
YGGNETVRAGENAESVLMKFSKQGNTVTTYFSADNGNSWNKIGQADASFLGKDIKLAFAS
ASSSEPDGNNTPVSYTDITLNGKKIKIGTKKTVQDITPSGKIPTAKNTQARITGSVSGLL
DGEITTIPNVFNYAATTDAAHSLIKVAFKTSPKATMRLQLNNKELKPGADGTINSIQLAP
GTNILKADVIAENGITHSVYRWTMLNTDTRANSAPATSEASRSVQVSVPNEQANMGTAAI
EPNTIKGVKLYKGDTVTLKATPAEGYRFTGWHLADKTVSSEPEFSYTVADRDVVFNATFA
PIVSPDTPPIDTPPSDTPTTNPPTTGGATPDTSSGGKATLKGVASQKRTTRQTQSGKNSK
PTVAGLTKTGSQDVFLLALTSLILVSGGAIIRNRKSSQLRK

Enzyme Prediction     

EC	3.2.1.-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH110	6	510	1.3e-147	0.8375912408759124

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam13229	Beta_helix	7.60e-08	369	467	51	140	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam13229	Beta_helix	1.36e-07	374	467	10	93	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam18998	Flg_new_2	4.59e-06	1033	1082	22	73	Divergent InlB B-repeat domain. This family of domains are found in bacterial cell surface proteins. They are often found in tandem array. This domain is closely related to pfam09479.
pfam13229	Beta_helix	8.32e-05	368	465	73	157	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam05048	NosD	1.63e-04	359	471	62	153	Periplasmic copper-binding protein (NosD). NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
BBA55548.1	1.28e-204	1	639	87	708
AFL04872.1	5.71e-203	1	639	87	708
QRI58269.1	6.49e-203	1	639	92	713
BAQ98494.1	8.01e-203	1	639	87	708
VEG17902.1	1.44e-202	1	639	110	731

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
7JW4_A	2.20e-29	10	508	91	566	Crystalstructure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta],7JW4_B Crystal structure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta]
7JWF_A	9.13e-29	10	508	91	566	Crystalstructure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_B Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_C Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_D Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
B1V8K7	1.20e-136	1	658	95	725	Alpha-1,3-galactosidase A OS=Streptacidiphilus griseoplanus OX=66896 GN=glaA PE=1 SV=1
Q826C5	2.94e-131	1	569	101	622	Alpha-1,3-galactosidase A OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=glaA PE=3 SV=1
Q8A2Z5	9.35e-77	10	476	83	511	Alpha-1,3-galactosidase A OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=glaA PE=3 SV=1
Q64MU6	7.16e-75	8	508	93	550	Alpha-1,3-galactosidase A OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=glaA PE=3 SV=1
Q5L7M8	1.34e-74	8	508	93	550	Alpha-1,3-galactosidase A OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / NCTC 9343 / Onslow) OX=272559 GN=glaA PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000069	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

start	end
1154	1171