CAZyme Information: MGYG000000959_00293

Basic Information

• Species: Ruminococcus sp900752785
• Lineage: Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus; Ruminococcus sp900752785
• CAZyme ID: MGYG000000959_00293
• CAZy Family: cohesin
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1352		142166.98	4.1524

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000959	2365658	MAG	Denmark	Europe

• Gene Location: Start: 78; End: 4136 Strand: +

Full Sequence      

MEDRKEWTYTSINGVISFGNDPGTSSSTTTTTTTTTTTTTTTTTTGSTPVGDENLIIDFG
NYKATPGESLLVEAKIKNNGGTFPIAVFEGEITLDDPLTIKAGKSASPAFGNTAKVQVNP
KENFQPTPVQPTPINKLTIMGLYDSKGDPLVAKDDEVFLTLMLNIPADVDTSKEYKIGLK
DAIIYNRGDMEDRKEWTYKSINGVISFDNGGTSSSTTTTTTTTTTTTTTSGSKTTTTTTT
TTTTTTTTTTNKPVEGAVEWVIPTVNALPGETVTMDVIVKNSDIEVSGAQFNINAKAPVS
LKSSSGSDAYGSKFVYNVDTKQFAFGEGIGKGVKAEDGSTVFTLVYTVPTDCAAGVYPVE
WSNAFICDTNGNKITDKVTLTDGAIIVGAAGEISWILDNVKAKPGDEVTLNAVISDPDAS
KLAIAGAQFNINAKAPIVYNTITGSEAYSGKIVMNNEKKAFAFAEPKGAGIASIDGGIVL
SITYTVPTDCPAGVYPVEWSKAFISDTNGKSLTDKVSLIDGSITVEDVETKGEVTWNIPE
VEAQPGDKVTMEVLVEGSSDPALSVAGAQFMINADEPIIYNSVAGSDAYKAKIVANDNDK
KFAFAHSIGSSVAADDGAIVLVLTYTVPEDCEDGTYPVKWSNAFISDTNGKNITDKVNLD
DGAIIVKKATTTTTTTITTTTTTSGTTTTTTSGSTTTTTTTSGSTTTTTTTSGSTTTTTT
TTTTTTTTTTTTLPAGAVLWKIDTVEAQPGDTVKLNMVVIDSNGSKIPIAGAQFDINADA
PIEYVNVSGKSDAYGADIVANKATKEFAFADGKGKGVASEDGKYVLTLTYTVPEDCADGT
YPVKISDLFVSSTDGVNMTDRVLTQNGAIIVKKATTTTTTTTTTTTTTTTSGTTTTTTSG
STTTTTTTSGSTTTTTTTSGSTTTTTTTTTTTTTTTTTTSGSTTTTTTTSGSTTTTTTTT
TTTTTTTTTTTTTTTTTIKIPDGGIAWQVGQATAKQGDTVKVPVKVYDLLGNKLAISDAK
FTISFDNDNLELVGVEGSDAYKAKVTYDAETGEYSFANGPGKAVVGNNMADVVILEIKVK
DTCPNGEYILDLENLLITDANGNDITSLVVPADGKIIVNGEHVRPFEGDVYAEVEKTHGF
YFSHDNGVRSNGTKGGFSPNQIVSLKIFERTTVDGNTTITPWTESEIDMSMINFGNAVPS
TVYDETNTTFKYEVPVYYGENALTDADGNQITVTVYIGVKGDIDLNNKVLANDASQALAY
YAATQIADPSEVKLSESEYVTGADDILDDFCAFLGDVDANEWSEDNWKLTKSERRILAND
AGSILTFYAKSQMPNAEAQAIWDEVVPERFGN

Enzyme Prediction     

No EC number prediction in MGYG000000959_00293.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
cohesin	740	863	7e-18	0.9626865671641791
cohesin	258	380	4.4e-16	0.9850746268656716
cohesin	534	658	7.5e-16	0.9776119402985075

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd14257	CttA_X	5.66e-19	1130	1239	9	116	X module of the carbohydrate-binding protein CttA and similar proteins. This model represents a putative carbohydrate-binding domain conserved in Ruminococcus, which sits N-terminal to a dockerin repeat; the protein may be a component of the Ruminococcus cellulosome system. This X module does not share similarities with other known X modules from cellulolytic bacteria and may have a structural role.
pfam00963	Cohesin	2.04e-13	740	871	3	139	Cohesin domain. Cohesin domains interact with a complementary domain, termed the dockerin domain. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome.
pfam00963	Cohesin	3.20e-11	258	387	1	139	Cohesin domain. Cohesin domains interact with a complementary domain, termed the dockerin domain. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome.
pfam00963	Cohesin	5.29e-11	534	666	1	139	Cohesin domain. Cohesin domains interact with a complementary domain, termed the dockerin domain. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome.
pfam00963	Cohesin	6.00e-11	393	525	1	139	Cohesin domain. Cohesin domains interact with a complementary domain, termed the dockerin domain. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome.

CAZyme Hits     

MGYG000000959_00293 has no CAZyme hit.

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5N5P_A	1.42e-53	253	388	2	136	Crystalstructure of Ruminococcus flavefaciens' type III complex containing the fifth cohesin from scaffoldin B and the dockerin from scaffoldin A [Ruminococcus flavefaciens FD-1],5N5P_C Crystal structure of Ruminococcus flavefaciens' type III complex containing the fifth cohesin from scaffoldin B and the dockerin from scaffoldin A [Ruminococcus flavefaciens FD-1]
4IU3_B	1.85e-32	1131	1345	15	236	Cohesin-dockerin-X domain complex from Ruminococcus flavefacience [Ruminococcus flavefaciens]
4WKZ_A	1.85e-32	1131	1348	15	239	Complexof autonomous ScaG cohesin CohG and X-doc domains [Ruminococcus flavefaciens FD-1]
4IU2_B	3.43e-32	1131	1345	15	236	Cohesin-dockerin-X domain complex from Ruminococcus flavefacience [Ruminococcus flavefaciens]
5M2S_A	6.60e-09	49	209	3	142	R.flavefaciens' third ScaB cohesin in complex with a group 1 dockerin [Ruminococcus flavefaciens]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000031	0.000033	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000000959_00293.