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CAZyme Information: MGYG000000902_03365

You are here: Home > Sequence: MGYG000000902_03365

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Clostridium neonatale
Lineage Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium neonatale
CAZyme ID MGYG000000902_03365
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
754 82530.07 4.365
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000902 4770522 MAG China Asia
Gene Location Start: 182;  End: 2446  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000902_03365.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 257 423 4.5e-48 0.8168316831683168
CBM77 647 748 2.6e-33 0.9805825242718447

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 9.85e-76 124 530 6 340
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 3.34e-36 260 425 17 190
Amb_all domain.
pfam18283 CBM77 2.05e-21 645 750 2 108
Carbohydrate binding module 77. This domain is the non-catalytic carbohydrate binding module 77 (CBM77) present in Ruminococcus flavefaciens. CBMs fulfil a critical targeting function in plant cell wall depolymerisation. In CBM77, a cluster of conserved basic residues (Lys1092, Lys1107 and Lys1162) confer calcium-independent recognition of homogalacturonan.
pfam00544 Pec_lyase_C 3.77e-21 266 421 42 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
pfam13229 Beta_helix 0.001 272 425 21 157
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ACZ98651.1 1.87e-292 16 752 12 704
AQR94278.1 4.38e-267 7 573 12 598
AOR96287.1 2.04e-265 15 575 8 570
AQS15728.1 2.92e-265 17 574 18 575
AGX44552.1 2.92e-265 17 574 18 575

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3VMV_A 2.31e-22 260 423 80 248
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
5FU5_A 6.71e-21 647 750 9 111
Thecomplexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition [Ruminococcus flavefaciens]
1VBL_A 8.40e-19 260 421 133 330
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
1PCL_A 1.07e-18 205 503 22 348
ChainA, PECTATE LYASE E [Dickeya chrysanthemi]
3ZSC_A 5.51e-17 254 406 63 221
Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8GCB2 2.97e-27 203 430 55 281
Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1
Q65DC2 2.97e-27 203 430 55 281
Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1
B1B6T1 2.97e-27 203 430 55 281
Pectate trisaccharide-lyase OS=Bacillus sp. OX=1409 GN=pel PE=1 SV=1
Q5AVN4 3.45e-20 260 434 99 277
Pectate lyase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyA PE=1 SV=1
P0C1C3 3.67e-20 266 437 115 294
Pectate lyase 3 OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=pel3 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000480 0.998722 0.000239 0.000197 0.000172 0.000153

TMHMM  Annotations      download full data without filtering help

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21 43