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CAZyme Information: MGYG000000620_01626
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Parolsenella uli_B | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Atopobiaceae; Parolsenella; Parolsenella uli_B | |||||||||||
| CAZyme ID | MGYG000000620_01626 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | Elongation factor 4 | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 5909; End: 8575 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK05306 | infB | 0.0 | 1 | 887 | 1 | 746 | translation initiation factor IF-2; Validated |
| CHL00189 | infB | 0.0 | 233 | 888 | 88 | 742 | translation initiation factor 2; Provisional |
| COG0532 | InfB | 0.0 | 386 | 887 | 1 | 506 | Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]. |
| TIGR00487 | IF-2 | 0.0 | 318 | 887 | 13 | 585 | translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. [Protein synthesis, Translation factors] |
| cd01887 | IF2_eIF5B | 3.02e-100 | 391 | 554 | 1 | 169 | Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AGL64345.2 | 5.32e-216 | 316 | 884 | 282 | 855 |
| CAE6204650.1 | 8.58e-10 | 394 | 610 | 751 | 983 |
| AHC21644.2 | 1.17e-06 | 395 | 523 | 20 | 173 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3JCJ_f | 1.14e-200 | 318 | 887 | 317 | 888 | Structuresof ribosome-bound initiation factor 2 reveal the mechanism of subunit association [Escherichia coli],3JCN_b Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I [Escherichia coli],5ME0_W Chain W, Translation initiation factor IF-2 [Escherichia coli K-12],5ME1_W Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112 [Escherichia coli K-12] |
| 6O7K_f | 3.07e-197 | 388 | 887 | 8 | 507 | 30Sinitiation complex [Escherichia coli],6O9K_z 70S initiation complex [Escherichia coli] |
| 1ZO1_I | 9.26e-197 | 388 | 887 | 2 | 501 | IF2,IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex [Escherichia coli] |
| 3J4J_A | 2.45e-153 | 345 | 884 | 37 | 569 | Modelof full-length T. thermophilus Translation Initiation Factor 2 refined against its cryo-EM density from a 30S Initiation Complex map [Thermus thermophilus HB8] |
| 5LMV_a | 7.32e-153 | 345 | 884 | 37 | 569 | Structureof bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III) [Thermus thermophilus HB8] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| C5D9C9 | 1.28e-229 | 318 | 886 | 160 | 731 | Translation initiation factor IF-2 OS=Geobacillus sp. (strain WCH70) OX=471223 GN=infB PE=3 SV=1 |
| Q3AB98 | 4.76e-227 | 306 | 887 | 241 | 825 | Translation initiation factor IF-2 OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) OX=246194 GN=infB PE=3 SV=1 |
| A4IMD7 | 1.03e-226 | 318 | 887 | 163 | 735 | Translation initiation factor IF-2 OS=Geobacillus thermodenitrificans (strain NG80-2) OX=420246 GN=infB PE=3 SV=1 |
| P04766 | 2.52e-226 | 318 | 887 | 169 | 741 | Translation initiation factor IF-2 OS=Geobacillus stearothermophilus OX=1422 GN=infB PE=1 SV=1 |
| Q8RA37 | 3.65e-225 | 307 | 886 | 125 | 707 | Translation initiation factor IF-2 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=infB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000041 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |