dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000000504_01952

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Species

CAG-312 sp000438015

Lineage

Bacteria; Verrucomicrobiota; Verrucomicrobiae; Opitutales; CAG-312; CAG-312; CAG-312 sp000438015

CAZyme ID

MGYG000000504_01952

CAZy Family

GH110

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
639	MGYG000000504_25\|CGC1	72891.66	7.5522

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000504	2519783	MAG	Fiji	Oceania

Gene Location

Start: 21256; End: 23175 Strand: +

No EC number prediction in MGYG000000504_01952.

Family	Start	End	Evalue	family coverage
GH110	58	603	1.4e-52	0.9981751824817519

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam13229	Beta_helix	1.79e-08	440	626	6	153	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
COG5434	Pgu1	1.81e-04	460	626	325	491	Polygalacturonase [Carbohydrate transport and metabolism].
pfam13229	Beta_helix	1.81e-04	542	631	32	109	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
COG5434	Pgu1	0.003	56	99	80	124	Polygalacturonase [Carbohydrate transport and metabolism].
pfam13229	Beta_helix	0.008	444	573	56	157	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AVM44429.1	3.44e-196	22	633	165	768
AVM44109.1	4.06e-190	22	633	206	805
AVM44539.1	5.22e-137	18	633	163	763
AVM46987.1	3.90e-100	24	636	132	748
QGQ98096.1	4.96e-92	34	635	995	1588

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
7JW4_A	8.07e-13	55	603	24	596	Crystalstructure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta],7JW4_B Crystal structure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta]
7JWF_A	3.23e-12	55	603	24	596	Crystalstructure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_B Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_C Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_D Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta]

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q64MU6	1.75e-20	54	592	21	568	Alpha-1,3-galactosidase A OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=glaA PE=3 SV=1
Q5L7M8	7.17e-20	54	625	21	600	Alpha-1,3-galactosidase A OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / NCTC 9343 / Onslow) OX=272559 GN=glaA PE=3 SV=1
B1KD83	4.93e-18	56	513	30	495	Alpha-1,3-galactosidase A OS=Shewanella woodyi (strain ATCC 51908 / MS32) OX=392500 GN=glaA PE=3 SV=1
Q89ZX0	3.36e-16	58	609	27	587	Alpha-1,3-galactosidase B OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=glaB PE=3 SV=1
A6KWM0	3.61e-10	56	592	21	582	Alpha-1,3-galactosidase B OS=Phocaeicola vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / CCUG 4940 / NBRC 14291 / NCTC 11154) OX=435590 GN=glaB1 PE=3 SV=1

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000291	0.999075	0.000166	0.000152	0.000145	0.000134

There is no transmembrane helices in MGYG000000504_01952.