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CAZyme Information: MGYG000000356_01388

You are here: Home > Sequence: MGYG000000356_01388

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; VUNI01;
CAZyme ID MGYG000000356_01388
CAZy Family GH23
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
2062 236311.89 5.6251
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000356 2991584 MAG Sweden Europe
Gene Location Start: 95656;  End: 101844  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000356_01388.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG4646 COG4646 3.13e-69 764 1320 1 593
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair].
COG4646 COG4646 3.16e-26 1429 1617 441 636
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair].
cd18011 DEXDc_RapA 5.75e-11 1231 1317 1 87
DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
smart00487 DEXDc 3.76e-10 1229 1333 7 110
DEAD-like helicases superfamily.
pfam04851 ResIII 2.60e-09 1228 1318 1 100
Type III restriction enzyme, res subunit.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ASV45029.1 0.0 457 1977 1534 3144
QIW86704.1 0.0 457 1977 1602 3212
QIW86628.1 0.0 457 1977 1602 3212
AXF51455.1 0.0 468 2012 1782 3415
AEY69616.1 0.0 468 2001 1689 3312

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q71TF8 2.12e-38 538 1591 70 1230
Defense against restriction protein B OS=Escherichia phage P1 OX=2886926 GN=darB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000081 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000356_01388.