CAZyme Information: MGYG000000303_01437

Basic Information

• Species: Varibaculum cambriense_A
• Lineage: Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Actinomycetaceae; Varibaculum; Varibaculum cambriense_A
• CAZyme ID: MGYG000000303_01437
• CAZy Family: GH136
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1145		123238.3	6.6647

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000303	2213433	MAG	Sweden	Europe

• Gene Location: Start: 6186; End: 9623 Strand: -

Full Sequence      

MLKALRRATILGSSMALTAGLVLSSASSFAADGGANMDKVRGTSYYVSSSAGNDQNSGTS
QDKPFKSLAKINEIKLGPGDKVLLKRGDTWNGQAIHVTTGSSGSKDAPIQIKPYGDGSAR
PVINTNGAGRWNQDYHARIESHRNKAEISSAVLLKDVNYLEISGLEVTNDREMNPEADPK
AYNDGLALERTGVAGIAENGPMRHIVVADMYIHDIDGNIYDKHLANGGIYFMAHYPESGK
PATEADKIARFDDLQILNNRVETVSRWGIAAGYTAYQNIIDRPQNGPISDEIIAKYGSSK
VVIRGNYIKDAGGDSITTMYCDRPLIEYNVSDGAARHMNTTDYLHPHNINGPAGSGWGRV
AAGIWPWRCKNAIFQYNEAFNTRHAFTGNGDGQPWDADFGDGTVYQYNYSYANTGATIMF
CNNGSLHNTFRYNIAHSDVRGALDIPDQKDAHVYNNTFIMGEGSKIITRGHAPTRIENNI
FYKPDGVTKVEENWKPGNQIYDHNLYYNFATTPQDANKQVVAKGTPVLQNPAAVEMASNH
QARIHDGSTATTVFDGFKPVAGSAAIGNGKTITDANGYTVEHDFFGTAISGLPTIGAAEI
PVPAPNPTASPYQIDNKAKTITVAIAAAGSNKAPLVKNFLAQLGLPAGVKAKVMSGNTQL
GMDDPITEGAKVIIGEGAQASEYTVKVVSDFDWVRDYRETPAGNNKWMGVQGPYWFAQIK
QGNTWANMTTYDNDGWHNWAYNQYYGPGLDHNQGALKAPDQRGNIHGLLSSETPDTAMAF
KAPASGKVTFKIKDDEPYLRQNNHDPNATVTVSLMLNNKVLKSVDLKISRQKGDFVFNEQ
IALKAGDYLRVVSHNEGSLKANSVHISPVIKYVETEYNPAGQPVYDPNAPAAEKPQLSGT
DFTVEYSDAVPEAKSKVVKPQDAVEYSWGYPHPNSLQLGAQQVQLVADSGDGKRETTMVT
MTVVKKKLTAPAVTFDDNDRSYTVPDAPTCLEYSVKVDDQEAKVAKAGKVTVADSDKDVT
VQVSVASTCEGYEAGVATPFTHVFKANQQPPVVNPQEPGDNPQQPGDKPGTDKPGKPGVD
KPKPGTGETKPGKDNSGQPAVGGKKTPGSSNQQTASTGSQAGMIALLGLGFVAAGLAVAL
RRRTN

Enzyme Prediction     

EC	3.2.1.140

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH136	42	599	1.1e-151	0.9959266802443992

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
PHA00666	PHA00666	4.54e-04	1049	1112	23	81	putative protease
pfam13229	Beta_helix	0.003	248	385	5	116	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QSY56996.1	1.27e-209	38	876	41	940
QTB91395.1	1.27e-209	38	876	41	940
ADP35567.1	1.73e-199	42	883	67	934
ESV34046.1	4.21e-198	42	917	46	978
QGV03377.1	1.85e-197	42	917	46	978

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
7V6M_A	1.18e-188	38	599	4	576	ChainA, Fibronectin type III domain-containing protein [Tyzzerella nexilis]
7V6I_A	7.90e-176	38	599	9	608	ChainA, Lacto-N-biosidase [Bifidobacterium saguini DSM 23967]
5GQC_A	2.14e-174	42	599	17	596	Crystalstructure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_C Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_D Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_E Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_F Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_G Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_H Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQF_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQF_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum]
6KQT_A	1.90e-99	42	458	244	637	CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - native protein [Eubacterium ramulus ATCC 29099]
6KQS_A	4.64e-96	42	458	244	637	CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - selenomethionine derivative [Eubacterium ramulus ATCC 29099]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000476	0.998519	0.000221	0.000318	0.000231	0.000184

TMHMM  Annotations     

start	end
1121	1140