dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000000012_00158

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Species

Bacillus subtilis

Lineage

Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis

CAZyme ID

MGYG000000012_00158

CAZy Family

CBM50

CAZyme Description

Peptidoglycan endopeptidase LytF

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
488		51408.58	10.5527

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000000012	4053580	Isolate	United Kingdom	Europe

Gene Location

Start: 126300; End: 127766 Strand: -

No EC number prediction in MGYG000000012_00158.

Family	Start	End	Evalue	family coverage
CBM50	308	349	9.3e-16	0.95

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
PRK06347	PRK06347	3.93e-50	35	349	271	591	1,4-beta-N-acetylmuramoylhydrolase.
PRK06347	PRK06347	4.96e-45	24	285	328	592	1,4-beta-N-acetylmuramoylhydrolase.
pfam00877	NLPC_P60	4.34e-40	385	486	1	105	NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.
PRK06347	PRK06347	2.76e-36	174	350	332	524	1,4-beta-N-acetylmuramoylhydrolase.
COG0791	Spr	7.22e-34	376	485	78	197	Cell wall-associated hydrolase, NlpC family [Cell wall/membrane/envelope biogenesis].

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AFI27572.1	4.10e-290	1	488	1	488
QRZ93882.1	4.10e-290	1	488	1	488
AUS13182.1	2.37e-289	1	488	1	488
ASB60224.1	6.77e-289	1	488	1	488
AUZ37869.1	1.87e-288	1	488	1	487

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
7CFL_A	2.39e-19	374	486	15	136	ChainA, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile],7CFL_B Chain B, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile],7CFL_C Chain C, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile],7CFL_D Chain D, Putative cell wall hydrolase phosphatase-associated protein [Clostridioides difficile]
4XCM_A	1.02e-16	241	486	5	229	Crystalstructure of the putative NlpC/P60 D,L endopeptidase from T. thermophilus [Thermus thermophilus HB8],4XCM_B Crystal structure of the putative NlpC/P60 D,L endopeptidase from T. thermophilus [Thermus thermophilus HB8]
2K1G_A	1.00e-15	385	486	18	122	SolutionNMR structure of lipoprotein spr from Escherichia coli K12. Northeast Structural Genomics target ER541-37-162 [Escherichia coli K-12]
6B8C_A	5.19e-13	376	466	31	123	Crystalstructure of NlpC/p60 domain of peptidoglycan hydrolase SagA [Enterococcus faecium]
3PBI_A	3.51e-09	313	465	23	190	ChainA, Invasion Protein [Mycobacterium tuberculosis]

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
O07532	6.82e-262	1	488	1	488	Peptidoglycan endopeptidase LytF OS=Bacillus subtilis (strain 168) OX=224308 GN=lytF PE=1 SV=2
O31852	4.37e-140	1	488	1	414	D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase CwlS OS=Bacillus subtilis (strain 168) OX=224308 GN=cwlS PE=1 SV=1
P54421	3.61e-90	176	487	29	334	Probable peptidoglycan endopeptidase LytE OS=Bacillus subtilis (strain 168) OX=224308 GN=lytE PE=1 SV=1
P39046	4.79e-35	24	349	333	664	Muramidase-2 OS=Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258 / NCTC 12367 / WDCM 00089 / R) OX=768486 GN=EHR_05900 PE=1 SV=1
Q6GJK9	7.42e-35	174	475	28	311	N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=sle1 PE=3 SV=1

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000339	0.998815	0.000188	0.000243	0.000220	0.000187

There is no transmembrane helices in MGYG000000012_00158.