Home Repository Download Help About Statistics Taxonomy Blastx
Links
PULDB
CAZy
dbCAN2
dbCAN-seq
run_dbcan
CAZypedia
PlantCAZyme
Cite: NAR/gkaa742 2020

Statistics

General Statistics

The current release of dbCAN-PUL is based on PubMed searches as of Nov 11 2021.
Currently the dbCAN-PUL database contains:
Total number of PULs: 633 Number of differnet CAZyme families represented in dbCAN-PUL: 194
Number of different represented substrates: 57 Number of genera represented: 97
Number of PUL characterization methods: 107 Number of PULs with CGCs predicted by CGCFinder: 551
Number of CAZyme proteins across all PULs: 2,145 Number of proteins contained in CGCs across all PULs: 7,838

Browse dbCAN-PUL by substrate:

Distribution of PUL according to substrateribose0.008771929825galactose0.02631578947dextran0.04385964912melicitose0.06140350877capsule polysaccharide degradation0.07894736842gentiobiose0.09649122807glucomannan/chitin0.1140350877nigerooligosaccharide0.1315789474hyaluronan0.149122807xylooligosaccharide0.1666666667beta-mannan 0.1842105263sulfosugar0.201754386trehalose0.2192982456alpha-galactan0.2368421053fucose0.2543859649beta-mannooligosaccharide0.2719298246raffinose family oligosaccharides0.2894736842lactose0.3070175439inulin0.3245614035N-glycan0.3421052632glycogen0.3596491228beta-glucoside0.3771929825beta-galactooligosaccharide0.3947368421levoglucosan0.4122807018fructo-disaccharide0.4298245614agar0.4473684211melibiose0.4649122807alpha-mannan0.4824561404alpha-glucan0.5Hemicellulose0.5175438596raffinose0.5350877193arabinoxylan0.5526315789galactooligosaccharide0.5701754386agarose0.5877192982glucomannan0.6052631579galactan0.6228070175arabinogalactan0.6403508772galactomannan0.6578947368xyloglucan0.6754385965beta-mannan0.6929824561pectic polysaccharide0.7105263158carrageenan0.7280701754cellobiose0.7456140351mucin0.7631578947chitin0.7807017544fucoidan0.798245614glycosaminoglycan0.8157894737arabinan0.8333333333cellulose0.850877193fructan0.8684210526human milk oligosaccharide0.8859649123alginate0.9035087719beta-glucan0.9210526316starch0.9385964912host glycan0.9561403509pectin0.9736842105xylan0.99122807020102030405060Get_Substrate_entries?substrate=riboseribose115.543424317617868499.7800269905533riboseGet_Substrate_entries?substrate=galactosegalactose115.543424317617868491.1093117408907galactoseGet_Substrate_entries?substrate=dextrandextran115.543424317617868482.43859649122805dextranGet_Substrate_entries?substrate=melicitosemelicitose115.543424317617868473.7678812415654melicitoseGet_Substrate_entries?substrate=capsule polysaccharide degradationcapsule polysaccharide degradation115.543424317617868465.09716599190284capsule polysaccharide degradationGet_Substrate_entries?substrate=gentiobiosegentiobiose115.543424317617868456.4264507422402gentiobioseGet_Substrate_entries?substrate=glucomannan/chitinglucomannan/chitin115.543424317617868447.7557354925776glucomannan/chitinGet_Substrate_entries?substrate=nigerooligosaccharidenigerooligosaccharide115.543424317617868439.085020242915nigerooligosaccharideGet_Substrate_entries?substrate=hyaluronanhyaluronan115.543424317617868430.41430499325236hyaluronanGet_Substrate_entries?substrate=xylooligosaccharidexylooligosaccharide115.543424317617868421.7435897435897xylooligosaccharideGet_Substrate_entries?substrate=beta-mannan beta-mannan 115.543424317617868413.07287449392715beta-mannan Get_Substrate_entries?substrate=sulfosugarsulfosugar115.543424317617868404.4021592442645sulfosugarGet_Substrate_entries?substrate=trehalosetrehalose220.009925558312656395.7314439946019trehaloseGet_Substrate_entries?substrate=alpha-galactanalpha-galactan220.009925558312656387.0607287449393alpha-galactanGet_Substrate_entries?substrate=fucosefucose220.009925558312656378.39001349527666fucoseGet_Substrate_entries?substrate=beta-mannooligosaccharidebeta-mannooligosaccharide220.009925558312656369.719298245614beta-mannooligosaccharideGet_Substrate_entries?substrate=raffinose family oligosaccharidesraffinose family oligosaccharides220.009925558312656361.0485829959514raffinose family oligosaccharidesGet_Substrate_entries?substrate=lactoselactose220.009925558312656352.37786774628876lactoseGet_Substrate_entries?substrate=inulininulin324.47642679900744343.7071524966262inulinGet_Substrate_entries?substrate=N-glycanN-glycan324.47642679900744335.03643724696354N-glycanGet_Substrate_entries?substrate=glycogenglycogen428.94292803970223326.36572199730097glycogenGet_Substrate_entries?substrate=beta-glucosidebeta-glucoside428.94292803970223317.69500674763833beta-glucosideGet_Substrate_entries?substrate=beta-galactooligosaccharidebeta-galactooligosaccharide428.94292803970223309.0242914979757beta-galactooligosaccharideGet_Substrate_entries?substrate=levoglucosanlevoglucosan428.94292803970223300.3535762483131levoglucosanGet_Substrate_entries?substrate=fructo-disaccharidefructo-disaccharide428.94292803970223291.6828609986505fructo-disaccharideGet_Substrate_entries?substrate=agaragar533.40942928039702283.0121457489879agarGet_Substrate_entries?substrate=melibiosemelibiose637.87593052109181274.34143049932527melibioseGet_Substrate_entries?substrate=alpha-mannanalpha-mannan637.87593052109181265.67071524966263alpha-mannanGet_Substrate_entries?substrate=alpha-glucanalpha-glucan637.87593052109181257.0alpha-glucanGet_Substrate_entries?substrate=HemicelluloseHemicellulose637.87593052109181248.3292847503374HemicelluloseGet_Substrate_entries?substrate=raffinoseraffinose742.3424317617866239.65856950067482raffinoseGet_Substrate_entries?substrate=arabinoxylanarabinoxylan846.80893300248139230.98785425101218arabinoxylanGet_Substrate_entries?substrate=galactooligosaccharidegalactooligosaccharide846.80893300248139222.31713900134955galactooligosaccharideGet_Substrate_entries?substrate=agaroseagarose951.27543424317618213.6464237516869agaroseGet_Substrate_entries?substrate=glucomannanglucomannan951.27543424317618204.97570850202433glucomannanGet_Substrate_entries?substrate=galactangalactan1160.20843672456575196.3049932523617galactanGet_Substrate_entries?substrate=arabinogalactanarabinogalactan1160.20843672456575187.63427800269912arabinogalactanGet_Substrate_entries?substrate=galactomannangalactomannan1160.20843672456575178.96356275303643galactomannanGet_Substrate_entries?substrate=xyloglucanxyloglucan1160.20843672456575170.29284750337385xyloglucanGet_Substrate_entries?substrate=beta-mannanbeta-mannan1264.67493796526054161.62213225371121beta-mannanGet_Substrate_entries?substrate=pectic polysaccharidepectic polysaccharide1264.67493796526054152.95141700404864pectic polysaccharideGet_Substrate_entries?substrate=carrageenancarrageenan1473.60794044665013144.280701754386carrageenanGet_Substrate_entries?substrate=cellobiosecellobiose1578.0744416873449135.60998650472337cellobioseGet_Substrate_entries?substrate=mucinmucin1578.0744416873449126.93927125506073mucinGet_Substrate_entries?substrate=chitinchitin1682.54094292803968118.26855600539814chitinGet_Substrate_entries?substrate=fucoidanfucoidan1682.54094292803968109.5978407557355fucoidanGet_Substrate_entries?substrate=glycosaminoglycanglycosaminoglycan1787.00744416873448100.92712550607293glycosaminoglycanGet_Substrate_entries?substrate=arabinanarabinan1891.4739454094292692.25641025641023arabinanGet_Substrate_entries?substrate=cellulosecellulose1995.9404466501240683.58569500674766celluloseGet_Substrate_entries?substrate=fructanfructan21104.8734491315136474.91497975708502fructanGet_Substrate_entries?substrate=human milk oligosaccharidehuman milk oligosaccharide23113.8064516129032266.24426450742244human milk oligosaccharideGet_Substrate_entries?substrate=alginatealginate29140.6054590570719557.57354925775981alginateGet_Substrate_entries?substrate=beta-glucanbeta-glucan38180.8039702233250848.90283400809717beta-glucanGet_Substrate_entries?substrate=starchstarch42198.6699751861042440.23211875843454starchGet_Substrate_entries?substrate=host glycanhost glycan44207.602977667493831.561403508771956host glycanGet_Substrate_entries?substrate=pectinpectin56261.2009925558312522.890688259109318pectinGet_Substrate_entries?substrate=xylanxylan62288.014.219973009446683xylanDistribution of PUL according to substrate

Browse dbCAN-PUL by genus:

Distribution of PUL according to taxonomy rank (genus)Leuconostoc0.004545454545Streptobacillus0.01363636364Azotobacter0.02272727273[Ruminococcus]0.03181818182Spiroplasma0.04090909091Caulobacter0.05Maricaulis0.05909090909Stenotrophomonas0.06818181818gut0.07727272727Leeuwenhoekiella0.08636363636Saccharophagus0.09545454545Pectobacterium0.1045454545Staphylococcus0.1136363636Halorubrum0.1227272727Haloferax0.1318181818Gluconacetobacter0.1409090909Aliivibrio0.15Leptotrichia0.1590909091Cupriavidus0.1681818182Coprothermobacter0.1772727273Ralstonia0.1863636364Actinoplanes0.1954545455Salmonella0.2045454545Pseudomonas0.2136363636Photobacterium0.2227272727Thermoanaerobacterium0.2318181818Parageobacillus0.2409090909Rhodothermus0.25Winogradskyella0.2590909091Pseudooceanicola0.2681818182Eubacterium0.2772727273Gilvimarinus0.2863636364Cytophaga0.2954545455Microbacterium0.3045454545Shinella0.3136363636Levilactobacillus0.3227272727Granulicatella0.3318181818Aquimarina0.3409090909Mesoflavibacter0.35Marinovum0.3590909091Saccharicrinis0.3681818182Echinicola0.3772727273Pontibacter0.3863636364Listeria0.3954545455Thermus0.4045454545feces0.4136363636Dysgonomonas0.4227272727Thermococcus0.4318181818Agrobacterium0.4409090909Salegentibacter0.45Kribbella0.4590909091Cellvibrio0.4681818182Sphingomonas0.4772727273termite0.4863636364Polaribacter0.4954545455Tannerella0.5045454545Collimonas0.5136363636Microbulbifer0.5227272727Capnocytophaga0.5318181818Colwellia0.5409090909Paraglaciecola0.55[Eubacterium]0.5590909091Muricauda0.5681818182Coprococcus0.5772727273Lactiplantibacillus0.5863636364Bacteroidaceae0.5954545455Flavimarina0.6045454545Klebsiella0.6136363636Caldanaerobius0.6227272727Serratia0.6318181818Enterococcus0.6409090909Wenyingzhuangia0.65Akkermansia0.6590909091Barnesiella0.6681818182Cellulophaga0.6772727273Faecalibacterium0.6863636364Thermotoga0.6954545455Paenibacillus0.7045454545Corynebacterium0.7136363636Anaerostipes0.7227272727Blautia0.7318181818Dickeya0.7409090909Streptomyces0.75Maribacter0.7590909091Phocaeicola0.7681818182Gramella0.7772727273Rhodopirellula0.7863636364Lactococcus0.7954545455Caldicellulosiruptor0.8045454545Geobacillus0.8136363636Alteromonas0.8227272727Clostridium0.8318181818Roseburia0.8409090909Vibrio0.85Neorhodopirellula0.8590909091Xanthomonas0.8681818182Chitinophaga0.8772727273Escherichia0.8863636364Zobellia0.8954545455Ruminiclostridium0.9045454545Pseudoalteromonas0.9136363636Segatella0.9227272727Flavobacterium0.9318181818Bacillus0.9409090909Streptococcus0.95Lactobacillus0.9590909091Prevotella0.9681818182uncultured0.9772727273Bifidobacterium0.9863636364Bacteroides0.99545454550102030405060708090100110120130140Get_Organism_entries?organism=LeuconostocLeuconostoc114.7158555729984291019.3601398601398LeuconostocGet_Organism_entries?organism=StreptobacillusStreptobacillus114.7158555729984291010.2342657342657StreptobacillusGet_Organism_entries?organism=AzotobacterAzotobacter114.7158555729984291001.1083916083916AzotobacterGet_Organism_entries?organism=[Ruminococcus][Ruminococcus]114.715855572998429991.9825174825174[Ruminococcus]Get_Organism_entries?organism=SpiroplasmaSpiroplasma114.715855572998429982.8566433566433SpiroplasmaGet_Organism_entries?organism=CaulobacterCaulobacter114.715855572998429973.7307692307692CaulobacterGet_Organism_entries?organism=MaricaulisMaricaulis114.715855572998429964.6048951048951MaricaulisGet_Organism_entries?organism=StenotrophomonasStenotrophomonas114.715855572998429955.479020979021StenotrophomonasGet_Organism_entries?organism=gutgut114.715855572998429946.3531468531469gutGet_Organism_entries?organism=LeeuwenhoekiellaLeeuwenhoekiella114.715855572998429937.2272727272727LeeuwenhoekiellaGet_Organism_entries?organism=SaccharophagusSaccharophagus114.715855572998429928.1013986013986SaccharophagusGet_Organism_entries?organism=PectobacteriumPectobacterium114.715855572998429918.9755244755245PectobacteriumGet_Organism_entries?organism=StaphylococcusStaphylococcus114.715855572998429909.8496503496503StaphylococcusGet_Organism_entries?organism=HalorubrumHalorubrum114.715855572998429900.7237762237762HalorubrumGet_Organism_entries?organism=HaloferaxHaloferax114.715855572998429891.5979020979022HaloferaxGet_Organism_entries?organism=GluconacetobacterGluconacetobacter114.715855572998429882.4720279720281GluconacetobacterGet_Organism_entries?organism=AliivibrioAliivibrio114.715855572998429873.3461538461539AliivibrioGet_Organism_entries?organism=LeptotrichiaLeptotrichia114.715855572998429864.2202797202798LeptotrichiaGet_Organism_entries?organism=CupriavidusCupriavidus114.715855572998429855.0944055944057CupriavidusGet_Organism_entries?organism=CoprothermobacterCoprothermobacter114.715855572998429845.9685314685315CoprothermobacterGet_Organism_entries?organism=RalstoniaRalstonia114.715855572998429836.8426573426574RalstoniaGet_Organism_entries?organism=ActinoplanesActinoplanes114.715855572998429827.7167832167833ActinoplanesGet_Organism_entries?organism=SalmonellaSalmonella114.715855572998429818.5909090909091SalmonellaGet_Organism_entries?organism=PseudomonasPseudomonas114.715855572998429809.465034965035PseudomonasGet_Organism_entries?organism=PhotobacteriumPhotobacterium114.715855572998429800.3391608391609PhotobacteriumGet_Organism_entries?organism=ThermoanaerobacteriumThermoanaerobacterium114.715855572998429791.2132867132867ThermoanaerobacteriumGet_Organism_entries?organism=ParageobacillusParageobacillus114.715855572998429782.0874125874126ParageobacillusGet_Organism_entries?organism=RhodothermusRhodothermus114.715855572998429772.9615384615385RhodothermusGet_Organism_entries?organism=WinogradskyellaWinogradskyella114.715855572998429763.8356643356643WinogradskyellaGet_Organism_entries?organism=PseudooceanicolaPseudooceanicola114.715855572998429754.7097902097902PseudooceanicolaGet_Organism_entries?organism=EubacteriumEubacterium114.715855572998429745.583916083916EubacteriumGet_Organism_entries?organism=GilvimarinusGilvimarinus114.715855572998429736.4580419580419GilvimarinusGet_Organism_entries?organism=CytophagaCytophaga114.715855572998429727.3321678321678CytophagaGet_Organism_entries?organism=MicrobacteriumMicrobacterium114.715855572998429718.2062937062936MicrobacteriumGet_Organism_entries?organism=ShinellaShinella114.715855572998429709.0804195804195ShinellaGet_Organism_entries?organism=LevilactobacillusLevilactobacillus114.715855572998429699.9545454545454LevilactobacillusGet_Organism_entries?organism=GranulicatellaGranulicatella114.715855572998429690.8286713286712GranulicatellaGet_Organism_entries?organism=AquimarinaAquimarina114.715855572998429681.7027972027971AquimarinaGet_Organism_entries?organism=MesoflavibacterMesoflavibacter114.715855572998429672.576923076923MesoflavibacterGet_Organism_entries?organism=MarinovumMarinovum114.715855572998429663.4510489510488MarinovumGet_Organism_entries?organism=SaccharicrinisSaccharicrinis114.715855572998429654.3251748251747SaccharicrinisGet_Organism_entries?organism=EchinicolaEchinicola114.715855572998429645.1993006993006EchinicolaGet_Organism_entries?organism=PontibacterPontibacter114.715855572998429636.0734265734264PontibacterGet_Organism_entries?organism=ListeriaListeria216.854788069073784626.9475524475523ListeriaGet_Organism_entries?organism=ThermusThermus216.854788069073784617.8216783216783ThermusGet_Organism_entries?organism=fecesfeces216.854788069073784608.6958041958042fecesGet_Organism_entries?organism=DysgonomonasDysgonomonas216.854788069073784599.5699300699301DysgonomonasGet_Organism_entries?organism=ThermococcusThermococcus216.854788069073784590.444055944056ThermococcusGet_Organism_entries?organism=AgrobacteriumAgrobacterium216.854788069073784581.3181818181819AgrobacteriumGet_Organism_entries?organism=SalegentibacterSalegentibacter216.854788069073784572.1923076923077SalegentibacterGet_Organism_entries?organism=KribbellaKribbella216.854788069073784563.0664335664336KribbellaGet_Organism_entries?organism=CellvibrioCellvibrio216.854788069073784553.9405594405595CellvibrioGet_Organism_entries?organism=SphingomonasSphingomonas216.854788069073784544.8146853146853SphingomonasGet_Organism_entries?organism=termitetermite216.854788069073784535.6888111888112termiteGet_Organism_entries?organism=PolaribacterPolaribacter216.854788069073784526.5629370629371PolaribacterGet_Organism_entries?organism=TannerellaTannerella216.854788069073784517.4370629370629TannerellaGet_Organism_entries?organism=CollimonasCollimonas216.854788069073784508.3111888111888CollimonasGet_Organism_entries?organism=MicrobulbiferMicrobulbifer216.854788069073784499.18531468531467MicrobulbiferGet_Organism_entries?organism=CapnocytophagaCapnocytophaga216.854788069073784490.05944055944053CapnocytophagaGet_Organism_entries?organism=ColwelliaColwellia216.854788069073784480.9335664335664ColwelliaGet_Organism_entries?organism=ParaglaciecolaParaglaciecola216.854788069073784471.8076923076924ParaglaciecolaGet_Organism_entries?organism=[Eubacterium][Eubacterium]216.854788069073784462.68181818181813[Eubacterium]Get_Organism_entries?organism=MuricaudaMuricauda216.854788069073784453.5559440559441MuricaudaGet_Organism_entries?organism=CoprococcusCoprococcus216.854788069073784444.43006993006986CoprococcusGet_Organism_entries?organism=LactiplantibacillusLactiplantibacillus216.854788069073784435.30419580419584LactiplantibacillusGet_Organism_entries?organism=BacteroidaceaeBacteroidaceae216.854788069073784426.1783216783216BacteroidaceaeGet_Organism_entries?organism=FlavimarinaFlavimarina216.854788069073784417.0524475524476FlavimarinaGet_Organism_entries?organism=KlebsiellaKlebsiella318.993720565149136407.9265734265733KlebsiellaGet_Organism_entries?organism=CaldanaerobiusCaldanaerobius318.993720565149136398.8006993006993CaldanaerobiusGet_Organism_entries?organism=SerratiaSerratia318.993720565149136389.67482517482506SerratiaGet_Organism_entries?organism=EnterococcusEnterococcus318.993720565149136380.54895104895104EnterococcusGet_Organism_entries?organism=WenyingzhuangiaWenyingzhuangia318.993720565149136371.4230769230769WenyingzhuangiaGet_Organism_entries?organism=AkkermansiaAkkermansia318.993720565149136362.2972027972028AkkermansiaGet_Organism_entries?organism=BarnesiellaBarnesiella318.993720565149136353.17132867132864BarnesiellaGet_Organism_entries?organism=CellulophagaCellulophaga421.132653061224488344.0454545454545CellulophagaGet_Organism_entries?organism=FaecalibacteriumFaecalibacterium421.132653061224488334.9195804195805FaecalibacteriumGet_Organism_entries?organism=ThermotogaThermotoga421.132653061224488325.79370629370624ThermotogaGet_Organism_entries?organism=PaenibacillusPaenibacillus421.132653061224488316.6678321678322PaenibacillusGet_Organism_entries?organism=CorynebacteriumCorynebacterium421.132653061224488307.54195804195797CorynebacteriumGet_Organism_entries?organism=AnaerostipesAnaerostipes421.132653061224488298.41608391608395AnaerostipesGet_Organism_entries?organism=BlautiaBlautia421.132653061224488289.2902097902097BlautiaGet_Organism_entries?organism=DickeyaDickeya523.271585557299844280.1643356643357DickeyaGet_Organism_entries?organism=StreptomycesStreptomyces523.271585557299844271.03846153846155StreptomycesGet_Organism_entries?organism=MaribacterMaribacter523.271585557299844261.9125874125874MaribacterGet_Organism_entries?organism=PhocaeicolaPhocaeicola625.410518053375192252.78671328671328PhocaeicolaGet_Organism_entries?organism=GramellaGramella625.410518053375192243.66083916083915GramellaGet_Organism_entries?organism=RhodopirellulaRhodopirellula625.410518053375192234.534965034965RhodopirellulaGet_Organism_entries?organism=LactococcusLactococcus727.549450549450547225.40909090909088LactococcusGet_Organism_entries?organism=CaldicellulosiruptorCaldicellulosiruptor727.549450549450547216.28321678321674CaldicellulosiruptorGet_Organism_entries?organism=GeobacillusGeobacillus829.688383045525903207.1573426573426GeobacillusGet_Organism_entries?organism=AlteromonasAlteromonas829.688383045525903198.03146853146848AlteromonasGet_Organism_entries?organism=ClostridiumClostridium829.688383045525903188.90559440559434ClostridiumGet_Organism_entries?organism=RoseburiaRoseburia931.82731554160125179.77972027972032RoseburiaGet_Organism_entries?organism=VibrioVibrio931.82731554160125170.6538461538462VibrioGet_Organism_entries?organism=NeorhodopirellulaNeorhodopirellula931.82731554160125161.52797202797206NeorhodopirellulaGet_Organism_entries?organism=XanthomonasXanthomonas1033.966248037676614152.40209790209792XanthomonasGet_Organism_entries?organism=ChitinophagaChitinophaga1033.966248037676614143.2762237762238ChitinophagaGet_Organism_entries?organism=EscherichiaEscherichia1136.10518053375196134.15034965034965EscherichiaGet_Organism_entries?organism=ZobelliaZobellia1136.10518053375196125.02447552447552ZobelliaGet_Organism_entries?organism=RuminiclostridiumRuminiclostridium1238.24411302982732115.8986013986014RuminiclostridiumGet_Organism_entries?organism=PseudoalteromonasPseudoalteromonas1340.38304552590267106.77272727272727PseudoalteromonasGet_Organism_entries?organism=SegatellaSegatella1340.3830455259026797.64685314685313SegatellaGet_Organism_entries?organism=FlavobacteriumFlavobacterium1544.6609105180533888.520979020979FlavobacteriumGet_Organism_entries?organism=BacillusBacillus1646.7998430141287379.39510489510486BacillusGet_Organism_entries?organism=StreptococcusStreptococcus1953.2166405023547970.26923076923084StreptococcusGet_Organism_entries?organism=LactobacillusLactobacillus1953.2166405023547961.14335664335659LactobacillusGet_Organism_entries?organism=PrevotellaPrevotella2259.6334379905808552.01748251748245PrevotellaGet_Organism_entries?organism=uncultureduncultured3281.0227629513343742.891608391608315unculturedGet_Organism_entries?organism=BifidobacteriumBifidobacterium45108.8288854003139633.76573426573441BifidobacteriumGet_Organism_entries?organism=BacteroidesBacteroides147327.024.63986013986005BacteroidesDistribution of PUL according to taxonomy rank (genus)

Browse dbCAN-PUL by characterization method:

Distribution of PUL according to characterization methodimmunoblotting0.004672897196ATPase assay0.01401869159yeast two hybrid assay0.02336448598Assay of oligogalacturonide uptake in E. coli0.03271028037transport assay0.04205607477cosmid library screening0.05140186916promoter assay0.06074766355fitness contribution assay0.07009345794insertion sequencing0.07943925234carbon utilization assay0.08878504673protein structure characterization0.09813084112GlcNAc phosphorylation assays0.1074766355primer extension analysis0.1168224299protein fingerprinting (MALDI-TOF PMF)0.1261682243genes induced in presence of substrate0.1355140187binding assay0.1448598131beta-galactosidase assays0.1542056075microscale thermophoresis0.1635514019proteomic analysis0.1728971963substrate degradation assay0.1822429907assimilation assay0.191588785Enzymatic activity assay0.2009345794Fluorophore-assisted carbohydrate electrophoresis0.2102803738Recombinant expression 0.2196261682ultra-performance liquid chromatography–mass spectrometry(UPLC-MS)0.2289719626LC-ESI-MS0.238317757DSS-induced mouse colitis model0.2476635514gene deletion and growth assay0.2570093458thermal shift assay (TSA)0.2663551402fluorescence measurements0.2757009346Reducing End Assay0.285046729BCA assay0.2943925234pNP glycoside assay0.3037383178adhesion assay0.3130841121isothermal calorimetric titration0.3224299065transposon mutagenesis0.3317757009substrate specificity assay0.3411214953sugar utilization assay0.3504672897ion trap liquid chromatography0.3598130841clone0.3691588785gene chips0.3785046729strcutural analysis0.3878504673immunoprecipitation0.3971962617culureing methods0.4065420561fluorophore-assisted carbohydrate electrophoresis (FACE)0.4158878505dinitrosalicylic acid-assay (DNS-assay)0.4252336449quantification of reaction product reducing ends0.4345794393bicinchoninic acid (BCA) assay0.4439252336rapid plate method growth assay0.453271028enzyme specificity assay0.4626168224enzymatic product analysis0.4719626168proteome fractionation0.4813084112complementation study0.4906542056analysis of reaction products0.5mice colonization with mutant0.5093457944ion chromatography0.5186915888carbohydrate binding assay0.5280373832UHPLC-MS0.5373831776MALDI-TOF/MS0.546728972high performance gel permeation chromatography0.5560747664in vitro assimilation0.5654205607Southern Blot0.5747663551bicinchoninic acid (BCA) reducing-sugar assay0.5841121495enzyme product analysis0.5934579439expression of recombinant proteins0.6028037383label-free quantitative proteomics0.6121495327functional enrichment analysis0.6214953271size-exclusion chromatography (SEC)0.6308411215target decoy database analysis0.6401869159gene trait matching exercise0.6495327103liquid chromatography0.6588785047gene mutant0.6682242991substrate binding assay0.6775700935enzyme kinetic analysis0.6869158879affinity gel electrophoresis0.6962616822electrophoretic mobility shift assay0.7056074766lectin binding assay0.714953271HPLC0.7242990654para-hydroxybenzoic acid (PAHBAH) assay0.7336448598Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE)0.7429906542Western Blot0.7523364486Northern Blot0.761682243crystallization0.7710280374isothermal titration calorimetry (ITC)0.7803738318HPAEC-PAD0.7897196262liquid chromatography and mass spectrometry0.7990654206gas chromatography0.808411215NMR0.8177570093RT-qPCR0.8271028037reducing-sugar assay0.8364485981high-performance anion-exchange chromatography0.8457943925fosmid library screen0.8551401869SDS-PAGE0.8644859813differential gene expression0.8738317757RT-PCR0.8831775701clone and expression0.8925233645sequence homology analysis0.9018691589qPCR0.9112149533thin-layer chromatography0.9205607477mass spectrometry0.9299065421growth assay0.9392523364qRT-PCR0.9485981308gene deletion mutant and growth assay0.9579439252recombinant protein expression0.9672897196microarray0.976635514RNA-seq0.9859813084enzyme activity assay0.9953271028020406080100120140160180200Query_Entry_By_Experimental?method=immunoblottingimmunoblotting18.239316239316241198.8670021567218immunoblottingQuery_Entry_By_Experimental?method=ATPase assayATPase assay18.239316239316241187.8317757009345ATPase assayQuery_Entry_By_Experimental?method=yeast two hybrid assayyeast two hybrid assay18.239316239316241176.7965492451474yeast two hybrid assayQuery_Entry_By_Experimental?method=Assay of oligogalacturonide uptake in E. coliAssay of oligogalacturonide uptake in E. coli18.239316239316241165.76132278936Assay of oligogalacturonide uptake in E. coliQuery_Entry_By_Experimental?method=transport assaytransport assay18.239316239316241154.726096333573transport assayQuery_Entry_By_Experimental?method=cosmid library screeningcosmid library screening18.239316239316241143.6908698777856cosmid library screeningQuery_Entry_By_Experimental?method=promoter assaypromoter assay18.239316239316241132.6556434219985promoter assayQuery_Entry_By_Experimental?method=fitness contribution assayfitness contribution assay18.239316239316241121.6204169662112fitness contribution assayQuery_Entry_By_Experimental?method=insertion sequencinginsertion sequencing18.239316239316241110.5851905104241insertion sequencingQuery_Entry_By_Experimental?method=carbon utilization assaycarbon utilization assay18.239316239316241099.5499640546368carbon utilization assayQuery_Entry_By_Experimental?method=protein structure characterizationprotein structure characterization18.239316239316241088.5147375988497protein structure characterizationQuery_Entry_By_Experimental?method=GlcNAc phosphorylation assaysGlcNAc phosphorylation assays18.239316239316241077.4795111430624GlcNAc phosphorylation assaysQuery_Entry_By_Experimental?method=primer extension analysisprimer extension analysis18.239316239316241066.4442846872753primer extension analysisQuery_Entry_By_Experimental?method=protein fingerprinting (MALDI-TOF PMF)protein fingerprinting (MALDI-TOF PMF)18.239316239316241055.4090582314882protein fingerprinting (MALDI-TOF PMF)Query_Entry_By_Experimental?method=genes induced in presence of substrategenes induced in presence of substrate18.239316239316241044.3738317757009genes induced in presence of substrateQuery_Entry_By_Experimental?method=binding assaybinding assay18.239316239316241033.3386053199138binding assayQuery_Entry_By_Experimental?method=beta-galactosidase assaysbeta-galactosidase assays18.239316239316241022.3033788641264beta-galactosidase assaysQuery_Entry_By_Experimental?method=microscale thermophoresismicroscale thermophoresis18.239316239316241011.2681524083395microscale thermophoresisQuery_Entry_By_Experimental?method=proteomic analysisproteomic analysis18.239316239316241000.2329259525523proteomic analysisQuery_Entry_By_Experimental?method=substrate degradation assaysubstrate degradation assay18.23931623931624989.197699496765substrate degradation assayQuery_Entry_By_Experimental?method=assimilation assayassimilation assay18.23931623931624978.1624730409778assimilation assayQuery_Entry_By_Experimental?method=Enzymatic activity assayEnzymatic activity assay18.23931623931624967.1272465851906Enzymatic activity assayQuery_Entry_By_Experimental?method=Fluorophore-assisted carbohydrate electrophoresisFluorophore-assisted carbohydrate electrophoresis18.23931623931624956.0920201294034Fluorophore-assisted carbohydrate electrophoresisQuery_Entry_By_Experimental?method=Recombinant expression Recombinant expression 18.23931623931624945.0567936736162Recombinant expression Query_Entry_By_Experimental?method=ultra-performance liquid chromatography–mass spectrometry(UPLC-MS)ultra-performance liquid chromatography–mass spectrometry(UPLC-MS)18.23931623931624934.021567217829ultra-performance liquid chromatography–mass spectrometry(UPLC-MS)Query_Entry_By_Experimental?method=LC-ESI-MSLC-ESI-MS18.23931623931624922.9863407620418LC-ESI-MSQuery_Entry_By_Experimental?method=DSS-induced mouse colitis modelDSS-induced mouse colitis model18.23931623931624911.9511143062546DSS-induced mouse colitis modelQuery_Entry_By_Experimental?method=gene deletion and growth assaygene deletion and growth assay18.23931623931624900.9158878504674gene deletion and growth assayQuery_Entry_By_Experimental?method=thermal shift assay (TSA)thermal shift assay (TSA)18.23931623931624889.8806613946801thermal shift assay (TSA)Query_Entry_By_Experimental?method=fluorescence measurementsfluorescence measurements18.23931623931624878.8454349388929fluorescence measurementsQuery_Entry_By_Experimental?method=Reducing End AssayReducing End Assay18.23931623931624867.8102084831057Reducing End AssayQuery_Entry_By_Experimental?method=BCA assayBCA assay18.23931623931624856.7749820273185BCA assayQuery_Entry_By_Experimental?method=pNP glycoside assaypNP glycoside assay18.23931623931624845.7397555715314pNP glycoside assayQuery_Entry_By_Experimental?method=adhesion assayadhesion assay29.094017094017095834.7045291157441adhesion assayQuery_Entry_By_Experimental?method=isothermal calorimetric titrationisothermal calorimetric titration29.094017094017095823.669302659957isothermal calorimetric titrationQuery_Entry_By_Experimental?method=transposon mutagenesistransposon mutagenesis29.094017094017095812.6340762041697transposon mutagenesisQuery_Entry_By_Experimental?method=substrate specificity assaysubstrate specificity assay29.094017094017095801.5988497483826substrate specificity assayQuery_Entry_By_Experimental?method=sugar utilization assaysugar utilization assay29.094017094017095790.5636232925953sugar utilization assayQuery_Entry_By_Experimental?method=ion trap liquid chromatographyion trap liquid chromatography29.094017094017095779.5283968368082ion trap liquid chromatographyQuery_Entry_By_Experimental?method=cloneclone29.094017094017095768.493170381021cloneQuery_Entry_By_Experimental?method=gene chipsgene chips29.094017094017095757.4579439252337gene chipsQuery_Entry_By_Experimental?method=strcutural analysisstrcutural analysis29.094017094017095746.4227174694464strcutural analysisQuery_Entry_By_Experimental?method=immunoprecipitationimmunoprecipitation29.094017094017095735.3874910136593immunoprecipitationQuery_Entry_By_Experimental?method=culureing methodsculureing methods29.094017094017095724.3522645578721culureing methodsQuery_Entry_By_Experimental?method=fluorophore-assisted carbohydrate electrophoresis (FACE)fluorophore-assisted carbohydrate electrophoresis (FACE)29.094017094017095713.3170381020849fluorophore-assisted carbohydrate electrophoresis (FACE)Query_Entry_By_Experimental?method=dinitrosalicylic acid-assay (DNS-assay)dinitrosalicylic acid-assay (DNS-assay)29.094017094017095702.2818116462977dinitrosalicylic acid-assay (DNS-assay)Query_Entry_By_Experimental?method=quantification of reaction product reducing endsquantification of reaction product reducing ends29.094017094017095691.2465851905105quantification of reaction product reducing endsQuery_Entry_By_Experimental?method=bicinchoninic acid (BCA) assaybicinchoninic acid (BCA) assay29.094017094017095680.2113587347234bicinchoninic acid (BCA) assayQuery_Entry_By_Experimental?method=rapid plate method growth assayrapid plate method growth assay39.94871794871795669.176132278936rapid plate method growth assayQuery_Entry_By_Experimental?method=enzyme specificity assayenzyme specificity assay39.94871794871795658.1409058231488enzyme specificity assayQuery_Entry_By_Experimental?method=enzymatic product analysisenzymatic product analysis39.94871794871795647.1056793673617enzymatic product analysisQuery_Entry_By_Experimental?method=proteome fractionationproteome fractionation39.94871794871795636.0704529115744proteome fractionationQuery_Entry_By_Experimental?method=complementation studycomplementation study39.94871794871795625.0352264557873complementation studyQuery_Entry_By_Experimental?method=analysis of reaction productsanalysis of reaction products39.94871794871795614.0000000000001analysis of reaction productsQuery_Entry_By_Experimental?method=mice colonization with mutantmice colonization with mutant39.94871794871795602.9647735442129mice colonization with mutantQuery_Entry_By_Experimental?method=ion chromatographyion chromatography39.94871794871795591.9295470884257ion chromatographyQuery_Entry_By_Experimental?method=carbohydrate binding assaycarbohydrate binding assay410.803418803418804580.8943206326385carbohydrate binding assayQuery_Entry_By_Experimental?method=UHPLC-MSUHPLC-MS410.803418803418804569.8590941768514UHPLC-MSQuery_Entry_By_Experimental?method=MALDI-TOF/MSMALDI-TOF/MS410.803418803418804558.8238677210641MALDI-TOF/MSQuery_Entry_By_Experimental?method=high performance gel permeation chromatographyhigh performance gel permeation chromatography410.803418803418804547.7886412652769high performance gel permeation chromatographyQuery_Entry_By_Experimental?method=in vitro assimilationin vitro assimilation410.803418803418804536.7534148094898in vitro assimilationQuery_Entry_By_Experimental?method=Southern BlotSouthern Blot511.65811965811966525.7181883537024Southern BlotQuery_Entry_By_Experimental?method=bicinchoninic acid (BCA) reducing-sugar assaybicinchoninic acid (BCA) reducing-sugar assay511.65811965811966514.6829618979153bicinchoninic acid (BCA) reducing-sugar assayQuery_Entry_By_Experimental?method=enzyme product analysisenzyme product analysis511.65811965811966503.6477354421281enzyme product analysisQuery_Entry_By_Experimental?method=expression of recombinant proteinsexpression of recombinant proteins511.65811965811966492.6125089863408expression of recombinant proteinsQuery_Entry_By_Experimental?method=label-free quantitative proteomicslabel-free quantitative proteomics612.512820512820515481.5772825305537label-free quantitative proteomicsQuery_Entry_By_Experimental?method=functional enrichment analysisfunctional enrichment analysis612.512820512820515470.5420560747665functional enrichment analysisQuery_Entry_By_Experimental?method=size-exclusion chromatography (SEC)size-exclusion chromatography (SEC)713.36752136752137459.5068296189793size-exclusion chromatography (SEC)Query_Entry_By_Experimental?method=target decoy database analysistarget decoy database analysis713.36752136752137448.47160316319207target decoy database analysisQuery_Entry_By_Experimental?method=gene trait matching exercisegene trait matching exercise713.36752136752137437.43637670740486gene trait matching exerciseQuery_Entry_By_Experimental?method=liquid chromatographyliquid chromatography713.36752136752137426.40115025161765liquid chromatographyQuery_Entry_By_Experimental?method=gene mutantgene mutant814.222222222222225415.36592379583044gene mutantQuery_Entry_By_Experimental?method=substrate binding assaysubstrate binding assay1116.78632478632479404.33069734004323substrate binding assayQuery_Entry_By_Experimental?method=enzyme kinetic analysisenzyme kinetic analysis1217.641025641025642393.295470884256enzyme kinetic analysisQuery_Entry_By_Experimental?method=affinity gel electrophoresisaffinity gel electrophoresis1217.641025641025642382.2602444284688affinity gel electrophoresisQuery_Entry_By_Experimental?method=electrophoretic mobility shift assayelectrophoretic mobility shift assay1217.641025641025642371.2250179726816electrophoretic mobility shift assayQuery_Entry_By_Experimental?method=lectin binding assaylectin binding assay1318.495726495726498360.1897915168944lectin binding assayQuery_Entry_By_Experimental?method=HPLCHPLC1520.205128205128208349.1545650611073HPLCQuery_Entry_By_Experimental?method=para-hydroxybenzoic acid (PAHBAH) assaypara-hydroxybenzoic acid (PAHBAH) assay1520.205128205128208338.11933860531997para-hydroxybenzoic acid (PAHBAH) assayQuery_Entry_By_Experimental?method=Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE)Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE)1520.205128205128208327.08411214953276Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE)Query_Entry_By_Experimental?method=Western BlotWestern Blot1621.059829059829063316.04888569374566Western BlotQuery_Entry_By_Experimental?method=Northern BlotNorthern Blot1721.91452991452992305.01365923795834Northern BlotQuery_Entry_By_Experimental?method=crystallizationcrystallization1822.769230769230774293.97843278217124crystallizationQuery_Entry_By_Experimental?method=isothermal titration calorimetry (ITC)isothermal titration calorimetry (ITC)1822.769230769230774282.94320632638403isothermal titration calorimetry (ITC)Query_Entry_By_Experimental?method=HPAEC-PADHPAEC-PAD2125.33333333333334271.9079798705967HPAEC-PADQuery_Entry_By_Experimental?method=liquid chromatography and mass spectrometryliquid chromatography and mass spectrometry2226.188034188034194260.8727534148096liquid chromatography and mass spectrometryQuery_Entry_By_Experimental?method=gas chromatographygas chromatography2226.188034188034194249.83752695902234gas chromatographyQuery_Entry_By_Experimental?method=NMRNMR2327.042735042735046238.80230050323513NMRQuery_Entry_By_Experimental?method=RT-qPCRRT-qPCR2327.042735042735046227.76707404744792RT-qPCRQuery_Entry_By_Experimental?method=reducing-sugar assayreducing-sugar assay2528.752136752136757216.7318475916607reducing-sugar assayQuery_Entry_By_Experimental?method=high-performance anion-exchange chromatographyhigh-performance anion-exchange chromatography3234.73504273504274205.6966211358736high-performance anion-exchange chromatographyQuery_Entry_By_Experimental?method=fosmid library screenfosmid library screen3335.58974358974359194.6613946800863fosmid library screenQuery_Entry_By_Experimental?method=SDS-PAGESDS-PAGE3335.58974358974359183.62616822429897SDS-PAGEQuery_Entry_By_Experimental?method=differential gene expressiondifferential gene expression3839.86324786324787172.59094176851187differential gene expressionQuery_Entry_By_Experimental?method=RT-PCRRT-PCR3940.71794871794872161.55571531272477RT-PCRQuery_Entry_By_Experimental?method=clone and expressionclone and expression4747.555555555555564150.52048885693745clone and expressionQuery_Entry_By_Experimental?method=sequence homology analysissequence homology analysis4848.410256410256416139.48526240115035sequence homology analysisQuery_Entry_By_Experimental?method=qPCRqPCR5150.97435897435898128.45003594536303qPCRQuery_Entry_By_Experimental?method=thin-layer chromatographythin-layer chromatography5251.82905982905984117.41480948957593thin-layer chromatographyQuery_Entry_By_Experimental?method=mass spectrometrymass spectrometry5352.68376068376069106.3795830337886mass spectrometryQuery_Entry_By_Experimental?method=growth assaygrowth assay5352.6837606837606995.34435657800151growth assayQuery_Entry_By_Experimental?method=qRT-PCRqRT-PCR5453.5384615384615584.30913012221441qRT-PCRQuery_Entry_By_Experimental?method=gene deletion mutant and growth assaygene deletion mutant and growth assay5655.2478632478632673.27390366642709gene deletion mutant and growth assayQuery_Entry_By_Experimental?method=recombinant protein expressionrecombinant protein expression5856.9572649572649662.23867721063976recombinant protein expressionQuery_Entry_By_Experimental?method=microarraymicroarray8479.1794871794871851.20345075485267microarrayQuery_Entry_By_Experimental?method=RNA-seqRNA-seq140127.0427350427350540.16822429906534RNA-seqQuery_Entry_By_Experimental?method=enzyme activity assayenzyme activity assay216192.029.132997843278247enzyme activity assayDistribution of PUL according to characterization method