dbCAN-PUL
Browse dbCAN-PUL Entries
| PULID |
Characterization Method(s) |
Substrate |
Organism |
Publication |
Publish Date |
Type |
Num Genes |
Num CAZymes |
CazyFamily |
| PUL0771 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Rhodopirellula sp. SWK7 |
39738071
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
27 |
7 |
GH141,
GH168,
GH29
|
| PUL0772 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Rhodopirellula sp. SWK7 |
39738071
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
9 |
1 |
GH29
|
| PUL0773 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Rhodopirellula sp. SWK7 |
39738071
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
23 |
3 |
GH116,
GH29,
GH97
|
| PUL0774 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Rhodopirellula sp. SWK7 |
39738071
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
23 |
8 |
GH117,
GH141,
GH168,
GH29,
GH95
|
| PUL0775 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Rhodopirellula sp. SWK7 |
39738071
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
14 |
5 |
CE14,
GH128,
GH141,
GH29
|
| PUL0776 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Rhodopirellula sp. SWK7 |
39738071
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
32 |
10 |
CE19,
CBM51,
CE20,
GH115,
GH116,
GH117,
GH117,
GH29,
GH95
|
| PUL0777 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Neorhodopirellula lusitana |
39738071
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
26 |
3 |
GH141,
GH29
|
| PUL0778 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Neorhodopirellula lusitana |
39738071
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
18 |
4 |
GH172,
GH29,
GH3,
GH95
|
| PUL0779 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Neorhodopirellula lusitana |
39738071
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
19 |
9 |
GH107,
GH141,
GH168,
GH29
|
| PUL0780 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Neorhodopirellula lusitana |
39738071
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
24 |
8 |
CBM32,
CE12,
CE6,
GH141,
GH29,
GH95
|
| PUL0781 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Neorhodopirellula lusitana |
39738071
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
17 |
4 |
GH116,
GH29,
GH95
|
| PUL0782 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Neorhodopirellula lusitana |
39738071
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
15 |
3 |
GH109,
GH117,
GH29
|
| PUL0783 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Neorhodopirellula lusitana |
39738071
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
20 |
6 |
CBM51,
GH115,
GH172,
GH28,
GH29,
GH95
|
| PUL0784 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Neorhodopirellula lusitana |
39738071
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
8 |
2 |
GH29,
GH95
|
| PUL0785 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Neorhodopirellula lusitana |
39738071
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
22 |
5 |
CE20,
CE20,
GH95,
CE7,
GH117,
GH168
|
