| PULID | Characterization Method(s) | Substrate | Organism | Publication | Publish Date | Type | Num Genes | Num CAZymes | CazyFamily |
|---|---|---|---|---|---|---|---|---|---|
| PUL0014 | sequence homology analysis, growth assay | pectin | Geobacillus thermodenitrificans | <a href=https://pubmed.ncbi.nlm.nih.gov/28900693/>28900693</a> Complete Genome Sequence of Geobacillus thermodenitrificans T12, A Potential Host for Biotechnological Applications. Curr Microbiol. 2018 Jan;75(1):49-56. doi: 10.1007/s00284-017-1349-0. Epub 2017 Sep 12. |
2018 Jan | degradation | 9 | 2 | GH105, PL1_6 |
| PUL0100 | transposon mutagenesis, growth assay | chitin | Escherichia coli | <a href=https://pubmed.ncbi.nlm.nih.gov/9405618/>9405618</a> Wild-type Escherichia coli grows on the chitin disaccharide, N,N'-diacetylchitobiose, by expressing the cel operon. Proc Natl Acad Sci U S A. 1997 Dec 23;94(26):14367-71. doi: 10.1073/pnas.94.26.14367. |
1997 Dec 23 | degradation | 6 | 1 | GH4 |
| PUL0126 | growth assay, sequence homology analysis | alginate | Alteromonas sp. 76-1 | <a href=https://pubmed.ncbi.nlm.nih.gov/30936857/>30936857</a> Adaptations of Alteromonas sp. 76-1 to Polysaccharide Degradation: A CAZyme Plasmid for Ulvan Degradation and Two Alginolytic Systems. Front Microbiol. 2019 Mar 18;10:504. doi: 10.3389/fmicb.2019.00504. eCollection 2019. |
2019 | degradation | 8 | 2 | PL6, PL6_1, PL7_5 |
| PUL0127 | growth assay, sequence homology analysis | alginate | Alteromonas sp. 76-1 | <a href=https://pubmed.ncbi.nlm.nih.gov/30936857/>30936857</a> Adaptations of Alteromonas sp. 76-1 to Polysaccharide Degradation: A CAZyme Plasmid for Ulvan Degradation and Two Alginolytic Systems. Front Microbiol. 2019 Mar 18;10:504. doi: 10.3389/fmicb.2019.00504. eCollection 2019. |
2019 | degradation | 12 | 4 | CBM32, PL7_5, PL6_3, PL6, PL6_1, PL7_5 |
| PUL0208 | growth assay, clone and expression, enzyme activity assay | chitin | Pseudoalteromonas luteoviolacea | <a href=https://pubmed.ncbi.nlm.nih.gov/31213521/>31213521</a>, <a href=https://pubmed.ncbi.nlm.nih.gov/10220172/>10220172</a> Marine Chitinolytic Pseudoalteromonas Represents an Untapped Reservoir of Bioactive Potential. Multiple genes involved in chitin degradation from the marine bacterium Pseudoalteromonas sp. strain S91. mSystems. 2019 Jun 18;4(4):e00060-19. doi: 10.1128/mSystems.00060-19. Microbiology (Reading). 1999 Apr;145 ( Pt 4):925-934. doi: 10.1099/13500872-145-4-925. |
2019 Jun 18,1999 Apr | degradation | 3 | 3 | AA10, CBM5, CBM5, GH18, GH18, CBM5, CBM5 |
| PUL0473 | growth assay | alpha-glucan | Flavobacterium johnsoniae | <a href=https://pubmed.ncbi.nlm.nih.gov/19717629/>19717629</a> Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 8 | 3 | GH13, GH13, CBM26, GH97 |
| PUL0474 | growth assay | xylan | Flavobacterium johnsoniae | <a href=https://pubmed.ncbi.nlm.nih.gov/19717629/>19717629</a> Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 9 | 5 | GH3, GH30_1, GH30_3 |
| PUL0476 | growth assay | pectin | Flavobacterium johnsoniae | <a href=https://pubmed.ncbi.nlm.nih.gov/19717629/>19717629</a> Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 11 | 6 | GH2, GH29, CBM32, CBM32, GH43_18, GH43_26, GH43_31, GH5_13 |
| PUL0477 | growth assay | beta-glucan | Flavobacterium johnsoniae | <a href=https://pubmed.ncbi.nlm.nih.gov/19717629/>19717629</a> Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 6 | 2 | GH16_3 |
| PUL0478 | growth assay | alpha-mannan | Flavobacterium johnsoniae | <a href=https://pubmed.ncbi.nlm.nih.gov/19717629/>19717629</a> Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 8 | 4 | GH125, GH2, GH92 |
| PUL0479 | growth assay | pectin | Flavobacterium johnsoniae | <a href=https://pubmed.ncbi.nlm.nih.gov/19717629/>19717629</a> Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 20 | 11 | GH2, GH27, GH28, GH43_19, GH43_34, GH51_2, GH89, GH92, GH95 |
| PUL0480 | growth assay | xylan | Flavobacterium johnsoniae | <a href=https://pubmed.ncbi.nlm.nih.gov/19717629/>19717629</a> Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 9 | 4 | GH10, GH16, GH3, GH8 |
| PUL0482 | growth assay | pectin | Flavobacterium johnsoniae | <a href=https://pubmed.ncbi.nlm.nih.gov/19717629/>19717629</a> Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 27 | 21 | CBM67, GH78, CE19, CE20, CE8, GH106, GH127, GH137, GH139, GH140, GH142, GH143, GH2, GH28, GH43_18, GH78, GH95, PL1_2, PL29 |
| PUL0483 | growth assay | pectin | Flavobacterium johnsoniae | <a href=https://pubmed.ncbi.nlm.nih.gov/19717629/>19717629</a> Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 12 | 7 | CE12, CE12, CE20, GH105, GH106, GH117, GH2, GH28 |
| PUL0484 | growth assay | pectin | Flavobacterium johnsoniae | <a href=https://pubmed.ncbi.nlm.nih.gov/19717629/>19717629</a> Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 12 | 8 | CE12, GH105, GH28, GH43_10, CBM91, PL10_1, CE8 |
| PUL0485 | growth assay, qRT-PCR, enzyme activity assay, affinity gel electrophoresis, crystallization, recombinant protein expression | starch | Flavobacterium johnsoniae | <a href=https://pubmed.ncbi.nlm.nih.gov/19717629/>19717629</a>, <a href=https://pubmed.ncbi.nlm.nih.gov/37269952/>37269952</a>, <a href=https://pubmed.ncbi.nlm.nih.gov/38661728/>38661728</a> Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria. Structural insights into alpha-(1-->6)-linkage preference of GH97 glucodextranase from Flavobacterium johnsoniae. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. J Biol Chem. 2023 Jul;299(7):104885. doi: 10.1016/j.jbc.2023.104885. Epub 2023 Jun 2. FEBS J. 2024 Jul;291(14):3267-3282. doi: 10.1111/febs.17139. Epub 2024 Apr 25. |
2009 Nov,2023 Jul,2024 Jul | degradation | 9 | 5 | GH27, CBM13, GH31, GH65, GH66, GH97 |
| PUL0488 | growth assay | beta-mannan | Flavobacterium johnsoniae | <a href=https://pubmed.ncbi.nlm.nih.gov/19717629/>19717629</a> Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 14 | 7 | GH130_1, GH26, GH27, GH5_2, GH5_7, GH97 |
| PUL0529 | microarray, qPCR, RNA-seq, reducing-sugar assay, growth assay | pectin | Bacteroides ovatus | <a href=https://pubmed.ncbi.nlm.nih.gov/22205877/>22205877</a>, <a href=https://pubmed.ncbi.nlm.nih.gov/39892338/>39892338</a> Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts. In vitro fermentation of a purified fraction of polysaccharides from the root of Brassica rapa L. by human gut microbiota and its interaction with Bacteroides ovatus. PLoS Biol. 2011 Dec;9(12):e1001221. doi: 10.1371/journal.pbio.1001221. Epub 2011 Dec 20. Food Chem. 2025 May 1;473:143109. doi: 10.1016/j.foodchem.2025.143109. Epub 2025 Jan 27. |
2011 Dec,2025 May 1 | degradation | 27 | 13 | CE12, CE8, CE8, GH105, GH28, GH3, GH43_10, CBM91, PL1_2 |
| PUL0558 | gene deletion mutant and growth assay, growth assay, enzyme activity assay | pectin | Bacteroides thetaiotaomicron | <a href=https://pubmed.ncbi.nlm.nih.gov/28329766/>28329766</a>, <a href=https://pubmed.ncbi.nlm.nih.gov/22205877/>22205877</a> Complex pectin metabolism by gut bacteria reveals novel catalytic functions. Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts. Nature. 2017 Apr 6;544(7648):65-70. doi: 10.1038/nature21725. Epub 2017 Mar 22. PLoS Biol. 2011 Dec;9(12):e1001221. doi: 10.1371/journal.pbio.1001221. Epub 2011 Dec 20. |
2017 Apr 6,2011 Dec | degradation | 50 | 21 | CBM67, GH78, CBM67, GH78, GH33, CE19, CE20, GH105, GH106, GH127, GH137, GH2, CBM57, CBM97, GH138, GH139, GH140, GH141, GH143, GH142, GH2, GH28, GH43_18, GH78, GH95, PL1_2 |
| PUL0559 | gene deletion mutant and growth assay, growth assay, enzyme activity assay, microarray, qPCR | pectin | Bacteroides thetaiotaomicron | <a href=https://pubmed.ncbi.nlm.nih.gov/28329766/>28329766</a>, <a href=https://pubmed.ncbi.nlm.nih.gov/18996345/>18996345</a>, <a href=https://pubmed.ncbi.nlm.nih.gov/22205877/>22205877</a>, <a href=https://pubmed.ncbi.nlm.nih.gov/16968696/>16968696</a> Complex pectin metabolism by gut bacteria reveals novel catalytic functions. Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts. Functional genomic and metabolic studies of the adaptations of a prominent adult human gut symbiont, Bacteroides thetaiotaomicron, to the suckling period. Nature. 2017 Apr 6;544(7648):65-70. doi: 10.1038/nature21725. Epub 2017 Mar 22. Cell Host Microbe. 2008 Nov 13;4(5):447-57. doi: 10.1016/j.chom.2008.09.007. PLoS Biol. 2011 Dec;9(12):e1001221. doi: 10.1371/journal.pbio.1001221. Epub 2011 Dec 20. J Biol Chem. 2006 Nov 24;281(47):36269-79. doi: 10.1074/jbc.M606509200. Epub 2006 Sep 12. |
2017 Apr 6,2008 Nov 13,2011 Dec,2006 Nov 24 | degradation | 12 | 4 | GH29, GH43_10, CBM91, GH43_34, CBM32, GH97 |
| PUL0575 | microarray, growth assay, gene deletion mutant and growth assay | raffinose | Enterococcus faecium | <a href=https://pubmed.ncbi.nlm.nih.gov/20946531/>20946531</a> A genetic element present on megaplasmids allows Enterococcus faecium to use raffinose as carbon source. Environ Microbiol. 2011 Feb;13(2):518-28. doi: 10.1111/j.1462-2920.2010.02355.x. Epub 2010 Oct 15. |
2011 Feb | degradation | 11 | 4 | GH13_18, GH13_31, GH36, GH4 |
| PUL0576 | growth assay | mucin | Bifidobacterium bifidum | <a href=https://pubmed.ncbi.nlm.nih.gov/20974960/>20974960</a> Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging. Proc Natl Acad Sci U S A. 2010 Nov 9;107(45):19514-9. doi: 10.1073/pnas.1011100107. Epub 2010 Oct 25. |
2010 Nov 9 | degradation | 9 | 1 | GH112 |
| PUL0591 | growth assay, Northern Blot | glycosaminoglycan | Bacillus subtilis | <a href=https://pubmed.ncbi.nlm.nih.gov/23667565/>23667565</a> The use of amino sugars by Bacillus subtilis: presence of a unique operon for the catabolism of glucosamine. PLoS One. 2013 May 8;8(5):e63025. doi: 10.1371/journal.pone.0063025. Print 2013. |
2013 | degradation | 4 | 1 | CE9 |
| PUL0631 | growth assay, sequence homology analysis | alginate | Pseudooceanicola algae Lw-13e | <a href=https://pubmed.ncbi.nlm.nih.gov/33310406/>33310406</a> Pseudooceanicola algae sp. nov., isolated from the marine macroalga Fucus spiralis, shows genomic and physiological adaptations for an algae-associated lifestyle. Syst Appl Microbiol. 2021 Jan;44(1):126166. doi: 10.1016/j.syapm.2020.126166. Epub 2020 Nov 27. |
2021 Jan | degradation | 8 | 1 | PL15_1 |
| PUL0658 | qPCR, growth assay | beta-mannooligosaccharide | Faecalibacterium prausnitzii SL3/3 | <a href=https://pubmed.ncbi.nlm.nih.gov/34061597/>34061597</a> Human Gut Faecalibacterium prausnitzii Deploys a Highly Efficient Conserved System To Cross-Feed on beta-Mannan-Derived Oligosaccharides. mBio. 2021 Jun 29;12(3):e0362820. doi: 10.1128/mBio.03628-20. Epub 2021 Jun 1. |
2021 Jun 29 | degradation | 14 | 6 | CE17, CBM35inCE17, CBM35inCE17, CE2, GH113, GH130_1, GH130_2, GH36 |
| PUL0659 | qPCR, growth assay | beta-mannooligosaccharide | Faecalibacterium prausnitzii SL3/3 | <a href=https://pubmed.ncbi.nlm.nih.gov/34061597/>34061597</a> Human Gut Faecalibacterium prausnitzii Deploys a Highly Efficient Conserved System To Cross-Feed on beta-Mannan-Derived Oligosaccharides. mBio. 2021 Jun 29;12(3):e0362820. doi: 10.1128/mBio.03628-20. Epub 2021 Jun 1. |
2021 Jun 29 | degradation | 2 | 2 | GH3 |
| PUL0675 | recombinant protein expression, enzyme activity assay, liquid chromatography, growth assay | levoglucosan | Klebsiella pneumoniae MEC097 | <a href=https://pubmed.ncbi.nlm.nih.gov/34910566/>34910566</a> Isolation and Characterization of Levoglucosan-Metabolizing Bacteria. Appl Environ Microbiol. 2022 Feb 22;88(4):e0186821. doi: 10.1128/AEM.01868-21. Epub 2021 Dec 15. |
2022 Feb 22 | degradation | 5 | 1 | GH179 |
| PUL0678 | RNA-seq, thin-layer chromatography, growth assay | inulin | Lactiplantibacillus plantarum QS7T | <a href=https://pubmed.ncbi.nlm.nih.gov/34980384/>34980384</a> Global genome and comparative transcriptomic analysis reveal the inulin consumption strategy of Lactiplantibacillus plantarum QS7T. Food Res Int. 2022 Jan;151:110846. doi: 10.1016/j.foodres.2021.110846. Epub 2021 Dec 2. |
2022 Jan | degradation | 5 | 2 | GH32, GH36 |
| PUL0679 | RNA-seq, thin-layer chromatography, growth assay | inulin | Lactiplantibacillus plantarum QS7T | <a href=https://pubmed.ncbi.nlm.nih.gov/34980384/>34980384</a> Global genome and comparative transcriptomic analysis reveal the inulin consumption strategy of Lactiplantibacillus plantarum QS7T. Food Res Int. 2022 Jan;151:110846. doi: 10.1016/j.foodres.2021.110846. Epub 2021 Dec 2. |
2022 Jan | degradation | 7 | 1 | GH32 |
| PUL0687 | growth assay, RNA-seq | xylooligosaccharide | Bacteroides vulgatus ATCC 8482 | <a href=https://pubmed.ncbi.nlm.nih.gov/36043703/>36043703</a>, <a href=https://pubmed.ncbi.nlm.nih.gov/27573446/>27573446</a> Structural and Biochemical Characterization of a Nonbinding SusD-Like Protein Involved in Xylooligosaccharide Utilization by an Uncultured Human Gut Bacteroides Strain. Functional characterization of a gene locus from an uncultured gut Bacteroides conferring xylo-oligosaccharides utilization to Escherichia coli. mSphere. 2022 Oct 26;7(5):e0024422. doi: 10.1128/msphere.00244-22. Epub 2022 Aug 31. Mol Microbiol. 2016 Nov;102(4):579-592. doi: 10.1111/mmi.13480. Epub 2016 Sep 14. |
2022 Oct 26,2016 Nov | degradation | 7 | 3 | GH10, GH43_1, GH43_12, CBM91 |
| PUL0706 | RNA-seq, growth assay | agar | Pseudoalteromonas atlantica T6c | <a href=https://pubmed.ncbi.nlm.nih.gov/37265394/>37265394</a> Constructing Marine Bacterial Metabolic Chassis for Potential Biorefinery of Red Algal Biomass and Agaropectin Wastes. ACS Synth Biol. 2023 Jun 16;12(6):1782-1793. doi: 10.1021/acssynbio.3c00063. Epub 2023 Jun 2. |
2023 Jun 16 | degradation | 43 | 15 | CE20, CE20, GH117, GH117, GH140, GH16_12, GH16_14, GH2, GH29, GH3, GH43_12, CBM91, GH43_2, CBM6, GH86 |
| PUL0707 | RNA-seq, growth assay | agar | Pseudoalteromonas atlantica T6c | <a href=https://pubmed.ncbi.nlm.nih.gov/37265394/>37265394</a> Constructing Marine Bacterial Metabolic Chassis for Potential Biorefinery of Red Algal Biomass and Agaropectin Wastes. ACS Synth Biol. 2023 Jun 16;12(6):1782-1793. doi: 10.1021/acssynbio.3c00063. Epub 2023 Jun 2. |
2023 Jun 16 | degradation | 46 | 4 | AA2, GH117, GH117, GH13_13, GH50 |
| PUL0708 | RNA-seq, growth assay | agar | Pseudoalteromonas atlantica T6c | <a href=https://pubmed.ncbi.nlm.nih.gov/37265394/>37265394</a> Constructing Marine Bacterial Metabolic Chassis for Potential Biorefinery of Red Algal Biomass and Agaropectin Wastes. ACS Synth Biol. 2023 Jun 16;12(6):1782-1793. doi: 10.1021/acssynbio.3c00063. Epub 2023 Jun 2. |
2023 Jun 16 | degradation | 41 | 5 | CE1, GH13_38, GH31, GH86 |
| PUL0709 | RNA-seq, growth assay | agar | Pseudoalteromonas atlantica T6c | <a href=https://pubmed.ncbi.nlm.nih.gov/37265394/>37265394</a> Constructing Marine Bacterial Metabolic Chassis for Potential Biorefinery of Red Algal Biomass and Agaropectin Wastes. ACS Synth Biol. 2023 Jun 16;12(6):1782-1793. doi: 10.1021/acssynbio.3c00063. Epub 2023 Jun 2. |
2023 Jun 16 | degradation | 29 | 0 | NA |
| PUL0710 | RNA-seq, growth assay, liquid chromatography and mass spectrometry, gene mutant, mice colonization with mutant | mucin | Akkermansia muciniphila ATCC BAA-835 | <a href=https://pubmed.ncbi.nlm.nih.gov/37337046/>37337046</a> A genetic system for Akkermansia muciniphila reveals a role for mucin foraging in gut colonization and host sterol biosynthesis gene expression. Nat Microbiol. 2023 Aug;8(8):1450-1467. doi: 10.1038/s41564-023-01407-w. Epub 2023 Jun 19. |
2023 Aug | degradation | 8 | 0 | NA |
| PUL0711 | RNA-seq, growth assay, liquid chromatography and mass spectrometry, gene mutant, mice colonization with mutant | mucin | Akkermansia muciniphila ATCC BAA-835 | <a href=https://pubmed.ncbi.nlm.nih.gov/37337046/>37337046</a> A genetic system for Akkermansia muciniphila reveals a role for mucin foraging in gut colonization and host sterol biosynthesis gene expression. Nat Microbiol. 2023 Aug;8(8):1450-1467. doi: 10.1038/s41564-023-01407-w. Epub 2023 Jun 19. |
2023 Aug | degradation | 5 | 0 | NA |
| PUL0712 | growth assay, RNA-seq, qPCR | pectic polysaccharide | Bacteroides thetaiotaomicron VPI-5482 | <a href=https://pubmed.ncbi.nlm.nih.gov/37451376/>37451376</a> A pectic polysaccharide isolated from Achyranthes bidentata is metabolized by human gut Bacteroides spp. Int J Biol Macromol. 2023 Sep 1;248:125785. doi: 10.1016/j.ijbiomac.2023.125785. Epub 2023 Jul 13. |
2023 Sep 1 | degradation | 10 | 0 | NA |
| PUL0713 | growth assay, RNA-seq, qPCR | pectic polysaccharide | Bacteroides thetaiotaomicron VPI-5482 | <a href=https://pubmed.ncbi.nlm.nih.gov/37451376/>37451376</a> A pectic polysaccharide isolated from Achyranthes bidentata is metabolized by human gut Bacteroides spp. Int J Biol Macromol. 2023 Sep 1;248:125785. doi: 10.1016/j.ijbiomac.2023.125785. Epub 2023 Jul 13. |
2023 Sep 1 | degradation | 4 | 0 | NA |
| PUL0716 | growth assay, RT-PCR | arabinan | Mesoflavibacter profundi MTRN7 | <a href=https://pubmed.ncbi.nlm.nih.gov/37550707/>37550707</a> Deep-sea Bacteroidetes from the Mariana Trench specialize in hemicellulose and pectin degradation typically associated with terrestrial systems. Microbiome. 2023 Aug 7;11(1):175. doi: 10.1186/s40168-023-01618-7. |
2023 Aug 7 | degradation | 16 | 8 | GH127, GH43_26, GH43_29, GH43_4, GH43_5, GH51_1, GH51_2, GH97 |
| PUL0719 | RNA-seq, growth assay | starch | Xanthomonas citri pv. citri str. 306 | <a href=https://pubmed.ncbi.nlm.nih.gov/37855631/>37855631</a> Plant structural and storage glucans trigger distinct transcriptional responses that modulate the motility of Xanthomonas pathogens. Microbiol Spectr. 2023 Dec 12;11(6):e0228023. doi: 10.1128/spectrum.02280-23. Epub 2023 Oct 19. |
2023 Dec 12 | degradation | 7 | 3 | GH13_2, GH13_23, GH97 |
| PUL0737 | mass spectrometry, SDS-PAGE, growth assay | arabinogalactan | Maribacter sp. MAR_2009_72 | <a href=https://pubmed.ncbi.nlm.nih.gov/38569650/>38569650</a> Proteomic insight into arabinogalactan utilization by particle-associated Maribacter sp. MAR_2009_72. FEMS Microbiol Ecol. 2024 Apr 10;100(5):fiae045. doi: 10.1093/femsec/fiae045. |
2024 Apr 10 | degradation | 16 | 4 | CE20, CE20, GH10, GH43_1, GH67 |
| PUL0738 | mass spectrometry, SDS-PAGE, growth assay | arabinogalactan | Maribacter sp. MAR_2009_72 | <a href=https://pubmed.ncbi.nlm.nih.gov/38569650/>38569650</a> Proteomic insight into arabinogalactan utilization by particle-associated Maribacter sp. MAR_2009_72. FEMS Microbiol Ecol. 2024 Apr 10;100(5):fiae045. doi: 10.1093/femsec/fiae045. |
2024 Apr 10 | degradation | 50 | 14 | CBM67, GH78, CE12, CE12, CE12, GH105, GH106, GH115, GH179, GH2, GH28, GH29, GH31_9, GH33, GH43_18 |
| PUL0739 | mass spectrometry, SDS-PAGE, growth assay | arabinogalactan | Maribacter sp. MAR_2009_72 | <a href=https://pubmed.ncbi.nlm.nih.gov/38569650/>38569650</a> Proteomic insight into arabinogalactan utilization by particle-associated Maribacter sp. MAR_2009_72. FEMS Microbiol Ecol. 2024 Apr 10;100(5):fiae045. doi: 10.1093/femsec/fiae045. |
2024 Apr 10 | degradation | 56 | 12 | CE12, GH105, GH140, GH177, GH179, GH28, GH43_10, CBM91, GH43_19, GH43_34, GH51_1, PL10_1, CE8, PL1_2 |
| PUL0740 | RNA-seq, ion chromatography, HPLC, growth assay | human milk oligosaccharide | Bifidobacterium longum subsp. infantis ATCC 15697 | <a href=https://pubmed.ncbi.nlm.nih.gov/32985563/>32985563</a>, <a href=https://pubmed.ncbi.nlm.nih.gov/31489370/>31489370</a> Strain-specific strategies of 2'-fucosyllactose, 3-fucosyllactose, and difucosyllactose assimilation by Bifidobacterium longum subsp. infantis Bi-26 and ATCC 15697. Evolutionary adaptation in fucosyllactose uptake systems supports bifidobacteria-infant symbiosis. Sci Rep. 2020 Sep 28;10(1):15919. doi: 10.1038/s41598-020-72792-z. Sci Adv. 2019 Aug 28;5(8):eaaw7696. doi: 10.1126/sciadv.aaw7696. eCollection 2019 Aug. |
2020 Sep 28,2019 Aug | degradation | 3 | 0 | NA |
| PUL0741 | RNA-seq, ion chromatography, HPLC, growth assay | human milk oligosaccharide | Bifidobacterium longum subsp. infantis ATCC 15697 | <a href=https://pubmed.ncbi.nlm.nih.gov/32985563/>32985563</a> Strain-specific strategies of 2'-fucosyllactose, 3-fucosyllactose, and difucosyllactose assimilation by Bifidobacterium longum subsp. infantis Bi-26 and ATCC 15697. Sci Rep. 2020 Sep 28;10(1):15919. doi: 10.1038/s41598-020-72792-z. |
2020 Sep 28 | degradation | 7 | 0 | NA |
| PUL0742 | gene deletion and growth assay, recombinant protein expression, crystallization, isothermal titration calorimetry (ITC), RNA-seq, ion chromatography, HPLC, growth assay | human milk oligosaccharide | Bifidobacterium longum subsp. infantis ATCC 15697 | <a href=https://pubmed.ncbi.nlm.nih.gov/32985563/>32985563</a>, <a href=https://pubmed.ncbi.nlm.nih.gov/31489370/>31489370</a> Strain-specific strategies of 2'-fucosyllactose, 3-fucosyllactose, and difucosyllactose assimilation by Bifidobacterium longum subsp. infantis Bi-26 and ATCC 15697. Evolutionary adaptation in fucosyllactose uptake systems supports bifidobacteria-infant symbiosis. Sci Rep. 2020 Sep 28;10(1):15919. doi: 10.1038/s41598-020-72792-z. Sci Adv. 2019 Aug 28;5(8):eaaw7696. doi: 10.1126/sciadv.aaw7696. eCollection 2019 Aug. |
2020 Sep 28,2019 Aug | degradation | 5 | 1 | GH151 |
| PUL0786 | RNA-seq, reducing-sugar assay, growth assay, high performance gel permeation chromatography, gas chromatography, RNA-seq, differential gene expression | pectic polysaccharide | Bacteroides ovatus strain ATCC 8483 | <a href=https://pubmed.ncbi.nlm.nih.gov/38890895/>38890895</a>, <a href=https://pubmed.ncbi.nlm.nih.gov/39892338/>39892338</a> The Utilization by Bacteroides spp. of a Purified Polysaccharide from Fuzhuan Brick Tea. In vitro fermentation of a purified fraction of polysaccharides from the root of Brassica rapa L. by human gut microbiota and its interaction with Bacteroides ovatus. Foods. 2024 May 26;13(11):1666. doi: 10.3390/foods13111666. Food Chem. 2025 May 1;473:143109. doi: 10.1016/j.foodchem.2025.143109. Epub 2025 Jan 27. |
2024 May 26,2025 May 1 | degradation | 26 | 14 | CBM67, GH78, CBM67, GH78, GH33, CE19, GH105, GH130_2, GH140, GH143, GH142, GH163, GH18, GH28, GH43_18, GH92, GH95, PL1_2 |
| PUL0787 | RNA-seq, reducing-sugar assay, growth assay | pectic polysaccharide | Bacteroides ovatus strain ATCC 8483 | <a href=https://pubmed.ncbi.nlm.nih.gov/39892338/>39892338</a> In vitro fermentation of a purified fraction of polysaccharides from the root of Brassica rapa L. by human gut microbiota and its interaction with Bacteroides ovatus. Food Chem. 2025 May 1;473:143109. doi: 10.1016/j.foodchem.2025.143109. Epub 2025 Jan 27. |
2025 May 1 | degradation | 31 | 16 | CE12, CE12, CE12, CE4, GH105, GH106, GH2, GH28, GH42, GH43_18, GH43_34, PL11_1, PL26 |
| PUL0788 | RNA-seq, reducing-sugar assay, growth assay | pectic polysaccharide | Bacteroides ovatus strain ATCC 8483 | <a href=https://pubmed.ncbi.nlm.nih.gov/39892338/>39892338</a> In vitro fermentation of a purified fraction of polysaccharides from the root of Brassica rapa L. by human gut microbiota and its interaction with Bacteroides ovatus. Food Chem. 2025 May 1;473:143109. doi: 10.1016/j.foodchem.2025.143109. Epub 2025 Jan 27. |
2025 May 1 | degradation | 26 | 8 | CE20, GH105, GH2, GH28, PL11, PL1_2, PL9_1 |
| PUL0789 | RNA-seq, reducing-sugar assay, growth assay | pectic polysaccharide | Bacteroides ovatus strain ATCC 8483 | <a href=https://pubmed.ncbi.nlm.nih.gov/39892338/>39892338</a> In vitro fermentation of a purified fraction of polysaccharides from the root of Brassica rapa L. by human gut microbiota and its interaction with Bacteroides ovatus. Food Chem. 2025 May 1;473:143109. doi: 10.1016/j.foodchem.2025.143109. Epub 2025 Jan 27. |
2025 May 1 | degradation | 9 | 2 | CBM6, GH28 |
| PUL0790 | RNA-seq, reducing-sugar assay, growth assay | pectic polysaccharide | Bacteroides ovatus strain ATCC 8483 | <a href=https://pubmed.ncbi.nlm.nih.gov/39892338/>39892338</a> In vitro fermentation of a purified fraction of polysaccharides from the root of Brassica rapa L. by human gut microbiota and its interaction with Bacteroides ovatus. Food Chem. 2025 May 1;473:143109. doi: 10.1016/j.foodchem.2025.143109. Epub 2025 Jan 27. |
2025 May 1 | degradation | 3 | 3 | GH127, GH141, GH78 |
| PUL0791 | RNA-seq, reducing-sugar assay, growth assay | pectic polysaccharide | Bacteroides ovatus strain ATCC 8483 | <a href=https://pubmed.ncbi.nlm.nih.gov/39892338/>39892338</a> In vitro fermentation of a purified fraction of polysaccharides from the root of Brassica rapa L. by human gut microbiota and its interaction with Bacteroides ovatus. Food Chem. 2025 May 1;473:143109. doi: 10.1016/j.foodchem.2025.143109. Epub 2025 Jan 27. |
2025 May 1 | degradation | 6 | 5 | CE20, GH106, GH139, GH2, PL1_2 |
| PUL0795 | RNA-seq, recombinant protein expression, growth assay | xyloglucan | Flavobacterium johnsoniae UW101 | <a href=https://pubmed.ncbi.nlm.nih.gov/39913342/>39913342</a> Metabolism of hemicelluloses by root-associated Bacteroidota species. ISME J. 2025 Jan 2;19(1):wraf022. doi: 10.1093/ismejo/wraf022. |
2025 Jan 2 | degradation | 12 | 8 | CE20, CE20, GH2, GH3, GH31_3, GH39, GH5_4, GH95, GH97 |
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