Browse dbCAN-PUL Entries
| PULID |
Characterization Method(s) |
Substrate |
Organism |
Publication |
Publish Date |
Type |
Num Genes |
Num CAZymes |
CazyFamily |
| PUL0115 |
expression of recombinant proteins,
RNA-seq,
differential gene expression
|
host glycan
|
Bacteroides thetaiotaomicron |
<a href=https://pubmed.ncbi.nlm.nih.gov/31160824/>31160824</a>
Complex N-glycan breakdown by gut Bacteroides involves an extensive enzymatic apparatus encoded by multiple co-regulated genetic loci. Nat Microbiol. 2019 Sep;4(9):1571-1581. doi: 10.1038/s41564-019-0466-x. Epub 2019 Jun 3. |
2019 Sep |
degradation |
7 |
7 |
CBM93,
GH33,
CE3,
CE20,
GH2,
GH20,
GH20,
CBM32
|
| PUL0116 |
expression of recombinant proteins,
RNA-seq,
differential gene expression
|
host glycan
|
Bacteroides thetaiotaomicron |
<a href=https://pubmed.ncbi.nlm.nih.gov/31160824/>31160824</a>
Complex N-glycan breakdown by gut Bacteroides involves an extensive enzymatic apparatus encoded by multiple co-regulated genetic loci. Nat Microbiol. 2019 Sep;4(9):1571-1581. doi: 10.1038/s41564-019-0466-x. Epub 2019 Jun 3. |
2019 Sep |
degradation |
2 |
1 |
GH20
|
| PUL0117 |
expression of recombinant proteins,
RNA-seq,
differential gene expression,
enzyme specificity assay,
enzyme activity assay
|
host glycan
|
Bacteroides thetaiotaomicron |
<a href=https://pubmed.ncbi.nlm.nih.gov/31160824/>31160824</a>, <a href=https://pubmed.ncbi.nlm.nih.gov/23943617/>23943617</a>
Complex N-glycan breakdown by gut Bacteroides involves an extensive enzymatic apparatus encoded by multiple co-regulated genetic loci. Discovery of beta-1,4-D-mannosyl-N-acetyl-D-glucosamine phosphorylase involved in the metabolism of N-glycans. Nat Microbiol. 2019 Sep;4(9):1571-1581. doi: 10.1038/s41564-019-0466-x. Epub 2019 Jun 3. J Biol Chem. 2013 Sep 20;288(38):27366-27374. doi: 10.1074/jbc.M113.469080. Epub 2013 Aug 13. |
2019 Sep,2013 Sep 20 |
degradation |
22 |
7 |
GH130_2,
GH163,
GH18,
GH20,
GH92
|
| PUL0120 |
expression of recombinant proteins,
RNA-seq,
differential gene expression
|
host glycan
|
Bacteroides thetaiotaomicron |
<a href=https://pubmed.ncbi.nlm.nih.gov/31160824/>31160824</a>
Complex N-glycan breakdown by gut Bacteroides involves an extensive enzymatic apparatus encoded by multiple co-regulated genetic loci. Nat Microbiol. 2019 Sep;4(9):1571-1581. doi: 10.1038/s41564-019-0466-x. Epub 2019 Jun 3. |
2019 Sep |
degradation |
6 |
1 |
GH18
|
| PUL0154 |
RNA-seq,
differential gene expression
|
human milk oligosaccharide
|
Lactobacillus rhamnosus |
<a href=https://pubmed.ncbi.nlm.nih.gov/30332787/>30332787</a>
Prebiotics for Lactose Intolerance: Variability in Galacto-Oligosaccharide Utilization by Intestinal Lactobacillus rhamnosus. Nutrients. 2018 Oct 16;10(10):1517. doi: 10.3390/nu10101517. |
2018 Oct 16 |
degradation |
3 |
1 |
GH1
|
| PUL0156 |
RNA-seq,
differential gene expression
|
human milk oligosaccharide
|
Lactobacillus rhamnosus |
<a href=https://pubmed.ncbi.nlm.nih.gov/30332787/>30332787</a>
Prebiotics for Lactose Intolerance: Variability in Galacto-Oligosaccharide Utilization by Intestinal Lactobacillus rhamnosus. Nutrients. 2018 Oct 16;10(10):1517. doi: 10.3390/nu10101517. |
2018 Oct 16 |
degradation |
2 |
1 |
GH2
|
| PUL0157 |
RNA-seq,
differential gene expression
|
human milk oligosaccharide
|
Lactobacillus rhamnosus |
<a href=https://pubmed.ncbi.nlm.nih.gov/30332787/>30332787</a>
Prebiotics for Lactose Intolerance: Variability in Galacto-Oligosaccharide Utilization by Intestinal Lactobacillus rhamnosus. Nutrients. 2018 Oct 16;10(10):1517. doi: 10.3390/nu10101517. |
2018 Oct 16 |
degradation |
4 |
1 |
GH1
|
| PUL0158 |
RNA-seq,
differential gene expression
|
human milk oligosaccharide
|
Lactobacillus rhamnosus |
<a href=https://pubmed.ncbi.nlm.nih.gov/30332787/>30332787</a>
Prebiotics for Lactose Intolerance: Variability in Galacto-Oligosaccharide Utilization by Intestinal Lactobacillus rhamnosus. Nutrients. 2018 Oct 16;10(10):1517. doi: 10.3390/nu10101517. |
2018 Oct 16 |
degradation |
4 |
1 |
GH1
|
| PUL0159 |
RNA-seq,
differential gene expression
|
human milk oligosaccharide
|
Lactobacillus rhamnosus |
<a href=https://pubmed.ncbi.nlm.nih.gov/30332787/>30332787</a>
Prebiotics for Lactose Intolerance: Variability in Galacto-Oligosaccharide Utilization by Intestinal Lactobacillus rhamnosus. Nutrients. 2018 Oct 16;10(10):1517. doi: 10.3390/nu10101517. |
2018 Oct 16 |
degradation |
2 |
1 |
GH2
|
| PUL0164 |
mass spectrometry,
sequence homology analysis,
differential gene expression
|
beta-mannan
|
Leeuwenhoekiella sp. MAR_2009_132 |
<a href=https://pubmed.ncbi.nlm.nih.gov/30246424/>30246424</a>
Alpha- and beta-mannan utilization by marine Bacteroidetes. Environ Microbiol. 2018 Nov;20(11):4127-4140. doi: 10.1111/1462-2920.14414. Epub 2018 Oct 16. |
2018 Nov |
degradation |
19 |
12 |
CBM8,
CE2,
CE20,
GH130_1,
GH26,
GH27,
GH3,
GH5_2,
GH5_7,
GH9
|
| PUL0165 |
mass spectrometry,
sequence homology analysis,
differential gene expression
|
beta-mannan
|
Salegentibacter sp. Hel_I_6 |
<a href=https://pubmed.ncbi.nlm.nih.gov/30246424/>30246424</a>
Alpha- and beta-mannan utilization by marine Bacteroidetes. Environ Microbiol. 2018 Nov;20(11):4127-4140. doi: 10.1111/1462-2920.14414. Epub 2018 Oct 16. |
2018 Nov |
degradation |
16 |
8 |
CE20,
GH130_1,
GH26,
GH27,
GH30,
GH5_2,
GH9
|
| PUL0467 |
microarray,
qPCR,
expression of recombinant proteins,
RNA-seq,
differential gene expression
|
host glycan
|
Bacteroides thetaiotaomicron |
<a href=https://pubmed.ncbi.nlm.nih.gov/18996345/>18996345</a>, <a href=https://pubmed.ncbi.nlm.nih.gov/31160824/>31160824</a>
Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Complex N-glycan breakdown by gut Bacteroides involves an extensive enzymatic apparatus encoded by multiple co-regulated genetic loci. Cell Host Microbe. 2008 Nov 13;4(5):447-57. doi: 10.1016/j.chom.2008.09.007. Nat Microbiol. 2019 Sep;4(9):1571-1581. doi: 10.1038/s41564-019-0466-x. Epub 2019 Jun 3. |
2008 Nov 13,2019 Sep |
degradation |
14 |
4 |
GH18,
GH2,
GH20,
GH29,
CBM32
|
| PUL0598 |
liquid chromatography and mass spectrometry,
differential gene expression
|
xylan
|
Clostridium cellulovorans 743B |
<a href=https://pubmed.ncbi.nlm.nih.gov/26020016/>26020016</a>
Elucidation of the recognition mechanisms for hemicellulose and pectin in Clostridium cellulovorans using intracellular quantitative proteome analysis. AMB Express. 2015 May 23;5:29. doi: 10.1186/s13568-015-0115-6. eCollection 2015. |
2015 |
degradation |
4 |
1 |
GH95
|
| PUL0599 |
liquid chromatography and mass spectrometry,
differential gene expression
|
xylan
|
Clostridium cellulovorans |
<a href=https://pubmed.ncbi.nlm.nih.gov/26020016/>26020016</a>
Elucidation of the recognition mechanisms for hemicellulose and pectin in Clostridium cellulovorans using intracellular quantitative proteome analysis. AMB Express. 2015 May 23;5:29. doi: 10.1186/s13568-015-0115-6. eCollection 2015. |
2015 |
degradation |
7 |
1 |
GH43_11,
CBM91
|
| PUL0600 |
liquid chromatography and mass spectrometry,
differential gene expression
|
galactomannan
|
Clostridium cellulovorans |
<a href=https://pubmed.ncbi.nlm.nih.gov/26020016/>26020016</a>
Elucidation of the recognition mechanisms for hemicellulose and pectin in Clostridium cellulovorans using intracellular quantitative proteome analysis. AMB Express. 2015 May 23;5:29. doi: 10.1186/s13568-015-0115-6. eCollection 2015. |
2015 |
degradation |
12 |
3 |
GH130_1,
GH130_2,
GH2
|
| PUL0601 |
liquid chromatography and mass spectrometry,
differential gene expression
|
pectin
|
Clostridium cellulovorans |
<a href=https://pubmed.ncbi.nlm.nih.gov/26020016/>26020016</a>
Elucidation of the recognition mechanisms for hemicellulose and pectin in Clostridium cellulovorans using intracellular quantitative proteome analysis. AMB Express. 2015 May 23;5:29. doi: 10.1186/s13568-015-0115-6. eCollection 2015. |
2015 |
degradation |
15 |
3 |
CE4,
GH105,
GH28
|
| PUL0744 |
RNA-seq,
HPLC,
gene mutant,
differential gene expression
|
lactose
|
Listeria monocytogenes serotype 4b str. F2365 |
<a href=https://pubmed.ncbi.nlm.nih.gov/38876592/>38876592</a>
Activation of a silent lactose utilization pathway in an evolved Listeria monocytogenes F2365 outbreak isolate. Food Res Int. 2024 Aug;189:114554. doi: 10.1016/j.foodres.2024.114554. Epub 2024 May 27. |
2024 Aug |
degradation |
5 |
1 |
GH1
|
| PUL0745 |
high performance gel permeation chromatography,
gas chromatography,
RNA-seq,
differential gene expression
|
pectic polysaccharide
|
Bacteroides ovatus strain ATCC 8483 |
<a href=https://pubmed.ncbi.nlm.nih.gov/38890895/>38890895</a>
The Utilization by Bacteroides spp. of a Purified Polysaccharide from Fuzhuan Brick Tea. Foods. 2024 May 26;13(11):1666. doi: 10.3390/foods13111666. |
2024 May 26 |
degradation |
12 |
4 |
GH146,
GH28,
GH30_2,
PL12
|
| PUL0746 |
high performance gel permeation chromatography,
gas chromatography,
RNA-seq,
differential gene expression
|
pectic polysaccharide
|
Bacteroides ovatus strain ATCC 8483 |
<a href=https://pubmed.ncbi.nlm.nih.gov/38890895/>38890895</a>
The Utilization by Bacteroides spp. of a Purified Polysaccharide from Fuzhuan Brick Tea. Foods. 2024 May 26;13(11):1666. doi: 10.3390/foods13111666. |
2024 May 26 |
degradation |
7 |
4 |
CBM93,
GH33,
GH2,
GH20,
GH20,
CBM32
|
| PUL0747 |
high performance gel permeation chromatography,
gas chromatography,
RNA-seq,
differential gene expression
|
pectic polysaccharide
|
Bacteroides ovatus strain ATCC 8483 |
<a href=https://pubmed.ncbi.nlm.nih.gov/38890895/>38890895</a>
The Utilization by Bacteroides spp. of a Purified Polysaccharide from Fuzhuan Brick Tea. Foods. 2024 May 26;13(11):1666. doi: 10.3390/foods13111666. |
2024 May 26 |
degradation |
9 |
3 |
GH2,
GH20,
GH29,
CBM32
|
| PUL0771 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Rhodopirellula sp. SWK7 |
<a href=https://pubmed.ncbi.nlm.nih.gov/39738071/>39738071</a>
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
27 |
7 |
GH141,
GH168,
GH29
|
| PUL0772 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Rhodopirellula sp. SWK7 |
<a href=https://pubmed.ncbi.nlm.nih.gov/39738071/>39738071</a>
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
9 |
1 |
GH29
|
| PUL0773 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Rhodopirellula sp. SWK7 |
<a href=https://pubmed.ncbi.nlm.nih.gov/39738071/>39738071</a>
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
23 |
3 |
GH116,
GH29,
GH97
|
| PUL0774 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Rhodopirellula sp. SWK7 |
<a href=https://pubmed.ncbi.nlm.nih.gov/39738071/>39738071</a>
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
23 |
8 |
GH117,
GH141,
GH168,
GH29,
GH95
|
| PUL0775 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Rhodopirellula sp. SWK7 |
<a href=https://pubmed.ncbi.nlm.nih.gov/39738071/>39738071</a>
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
14 |
5 |
CE14,
GH128,
GH141,
GH29
|
| PUL0776 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Rhodopirellula sp. SWK7 |
<a href=https://pubmed.ncbi.nlm.nih.gov/39738071/>39738071</a>
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
32 |
10 |
CE19,
CBM51,
CE20,
GH115,
GH116,
GH117,
GH117,
GH29,
GH95
|
| PUL0777 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Neorhodopirellula lusitana |
<a href=https://pubmed.ncbi.nlm.nih.gov/39738071/>39738071</a>
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
26 |
3 |
GH141,
GH29
|
| PUL0778 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Neorhodopirellula lusitana |
<a href=https://pubmed.ncbi.nlm.nih.gov/39738071/>39738071</a>
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
18 |
4 |
GH172,
GH29,
GH3,
GH95
|
| PUL0779 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Neorhodopirellula lusitana |
<a href=https://pubmed.ncbi.nlm.nih.gov/39738071/>39738071</a>
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
19 |
9 |
GH107,
GH141,
GH168,
GH29
|
| PUL0780 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Neorhodopirellula lusitana |
<a href=https://pubmed.ncbi.nlm.nih.gov/39738071/>39738071</a>
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
24 |
8 |
CBM32,
CE12,
CE6,
GH141,
GH29,
GH95
|
| PUL0781 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Neorhodopirellula lusitana |
<a href=https://pubmed.ncbi.nlm.nih.gov/39738071/>39738071</a>
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
17 |
4 |
GH116,
GH29,
GH95
|
| PUL0782 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Neorhodopirellula lusitana |
<a href=https://pubmed.ncbi.nlm.nih.gov/39738071/>39738071</a>
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
15 |
3 |
GH109,
GH117,
GH29
|
| PUL0783 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Neorhodopirellula lusitana |
<a href=https://pubmed.ncbi.nlm.nih.gov/39738071/>39738071</a>
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
20 |
6 |
CBM51,
GH115,
GH172,
GH28,
GH29,
GH95
|
| PUL0784 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Neorhodopirellula lusitana |
<a href=https://pubmed.ncbi.nlm.nih.gov/39738071/>39738071</a>
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
8 |
2 |
GH29,
GH95
|
| PUL0785 |
RNA-seq,
differential gene expression,
HPAEC-PAD,
SDS-PAGE,
para-hydroxybenzoic acid (PAHBAH) assay,
reducing-sugar assay,
Carbohydrate Polyacrylamide Gel Electrophoresis (C-PAGE),
enzyme activity assay
|
fucoidan
|
Neorhodopirellula lusitana |
<a href=https://pubmed.ncbi.nlm.nih.gov/39738071/>39738071</a>
Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota. Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. |
2024 Dec 30 |
degradation |
22 |
5 |
CE20,
CE20,
GH95,
CE7,
GH117,
GH168
|
| PUL0786 |
RNA-seq,
reducing-sugar assay,
growth assay,
high performance gel permeation chromatography,
gas chromatography,
RNA-seq,
differential gene expression
|
pectic polysaccharide
|
Bacteroides ovatus strain ATCC 8483 |
<a href=https://pubmed.ncbi.nlm.nih.gov/38890895/>38890895</a>, <a href=https://pubmed.ncbi.nlm.nih.gov/39892338/>39892338</a>
The Utilization by Bacteroides spp. of a Purified Polysaccharide from Fuzhuan Brick Tea. In vitro fermentation of a purified fraction of polysaccharides from the root of Brassica rapa L. by human gut microbiota and its interaction with Bacteroides ovatus. Foods. 2024 May 26;13(11):1666. doi: 10.3390/foods13111666. Food Chem. 2025 May 1;473:143109. doi: 10.1016/j.foodchem.2025.143109. Epub 2025 Jan 27. |
2024 May 26,2025 May 1 |
degradation |
26 |
14 |
CBM67,
GH78,
CBM67,
GH78,
GH33,
CE19,
GH105,
GH130_2,
GH140,
GH143,
GH142,
GH163,
GH18,
GH28,
GH43_18,
GH92,
GH95,
PL1_2
|
| PUL0793 |
enzyme activity assay,
quantification of reaction product reducing ends,
RNA-seq,
differential gene expression,
NMR,
MALDI-TOF/MS,
gas chromatography,
mass spectrometry,
bicinchoninic acid (BCA) assay,
recombinant protein expression
|
arabinan
|
Bacteroides intestinalis DSM 17393 |
<a href=https://pubmed.ncbi.nlm.nih.gov/39443715/>39443715</a>
In vivo manipulation of human gut Bacteroides fitness by abiotic oligosaccharides. Nat Chem Biol. 2025 Apr;21(4):544-554. doi: 10.1038/s41589-024-01763-6. Epub 2024 Oct 23. |
2025 Apr |
degradation |
14 |
6 |
CE1,
GH127,
GH146,
GH43_34,
CBM32,
GH97
|
| PUL0794 |
enzyme activity assay,
quantification of reaction product reducing ends,
RNA-seq,
differential gene expression,
NMR,
MALDI-TOF/MS,
gas chromatography,
mass spectrometry,
bicinchoninic acid (BCA) assay,
recombinant protein expression
|
arabinan
|
Bacteroides intestinalis DSM 17393 |
<a href=https://pubmed.ncbi.nlm.nih.gov/39443715/>39443715</a>
In vivo manipulation of human gut Bacteroides fitness by abiotic oligosaccharides. Nat Chem Biol. 2025 Apr;21(4):544-554. doi: 10.1038/s41589-024-01763-6. Epub 2024 Oct 23. |
2025 Apr |
degradation |
23 |
8 |
GH146,
GH28,
GH43_29,
GH43_4,
GH51_1,
GH51_2,
GH97
|
