| PULID | Characterization Method(s) | Substrate | Organism | Publication | Publish Date | Type | Num Genes | Num CAZymes | CazyFamily |
|---|---|---|---|---|---|---|---|---|---|
| PUL0028 | microarray, qPCR, enzyme activity assay | mucin | [Ruminococcus] gnavus | <a href=https://pubmed.ncbi.nlm.nih.gov/24204617/>24204617</a> Utilisation of mucin glycans by the human gut symbiont Ruminococcus gnavus is strain-dependent. PLoS One. 2013 Oct 25;8(10):e76341. doi: 10.1371/journal.pone.0076341. eCollection 2013. |
2013 | degradation | 14 | 4 | CBM40, GH33, GH1, GH140, GH177 |
| PUL0252 | gene chips | mucin | Bacteroides thetaiotaomicron | <a href=https://pubmed.ncbi.nlm.nih.gov/23996813/>23996813</a> Regulated expression of polysaccharide utilization and capsular biosynthesis loci in biofilm and planktonic Bacteroides thetaiotaomicron during growth in chemostats. Biotechnol Bioeng. 2014 Jan;111(1):165-73. doi: 10.1002/bit.24994. Epub 2013 Jul 30. |
2014 Jan | degradation | 6 | 2 | CBM32, GH29, CBM32 |
| PUL0376 | microarray, qPCR | mucin | Bacteroides thetaiotaomicron | <a href=https://pubmed.ncbi.nlm.nih.gov/18996345/>18996345</a> Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Cell Host Microbe. 2008 Nov 13;4(5):447-57. doi: 10.1016/j.chom.2008.09.007. |
2008 Nov 13 | degradation | 9 | 2 | GH16_3, GH18 |
| PUL0380 | microarray, qPCR, microarray, enzyme activity assay, strcutural analysis, clone and expression | mucin | Bacteroides thetaiotaomicron | <a href=https://pubmed.ncbi.nlm.nih.gov/18996345/>18996345</a>, <a href=https://pubmed.ncbi.nlm.nih.gov/16968696/>16968696</a>, <a href=https://pubmed.ncbi.nlm.nih.gov/32060313/>32060313</a> Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Functional genomic and metabolic studies of the adaptations of a prominent adult human gut symbiont, Bacteroides thetaiotaomicron, to the suckling period. Structural basis of mammalian high-mannose N-glycan processing by human gut Bacteroides. Cell Host Microbe. 2008 Nov 13;4(5):447-57. doi: 10.1016/j.chom.2008.09.007. J Biol Chem. 2006 Nov 24;281(47):36269-79. doi: 10.1074/jbc.M606509200. Epub 2006 Sep 12. Nat Commun. 2020 Feb 14;11(1):899. doi: 10.1038/s41467-020-14754-7. |
2008 Nov 13,2006 Nov 24,2020 Feb 14 | degradation | 12 | 4 | GH18, GH92 |
| PUL0382 | microarray, qPCR | mucin | Bacteroides thetaiotaomicron | <a href=https://pubmed.ncbi.nlm.nih.gov/18996345/>18996345</a> Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Cell Host Microbe. 2008 Nov 13;4(5):447-57. doi: 10.1016/j.chom.2008.09.007. |
2008 Nov 13 | degradation | 11 | 4 | CBM32, GH109, GH2 |
| PUL0383 | microarray, qPCR | mucin | Bacteroides thetaiotaomicron | <a href=https://pubmed.ncbi.nlm.nih.gov/18996345/>18996345</a> Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Cell Host Microbe. 2008 Nov 13;4(5):447-57. doi: 10.1016/j.chom.2008.09.007. |
2008 Nov 13 | degradation | 5 | 1 | GH89 |
| PUL0398 | gene deletion mutant and growth assay | mucin | Capnocytophaga canimorsus | <a href=https://pubmed.ncbi.nlm.nih.gov/21762219/>21762219</a>, <a href=https://pubmed.ncbi.nlm.nih.gov/25736888/>25736888</a> The genome and surface proteome of Capnocytophaga canimorsus reveal a key role of glycan foraging systems in host glycoproteins deglycosylation. Glycan-foraging systems reveal the adaptation of Capnocytophaga canimorsus to the dog mouth. Mol Microbiol. 2011 Aug;81(4):1050-60. doi: 10.1111/j.1365-2958.2011.07750.x. Epub 2011 Jul 18. mBio. 2015 Mar 3;6(2):e02507. doi: 10.1128/mBio.02507-14. |
2011 Aug,2015 Mar 3 | degradation | 9 | 3 | CBM32, GH2 |
| PUL0426 | microarray | mucin | Bacteroides ovatus | <a href=https://pubmed.ncbi.nlm.nih.gov/22205877/>22205877</a> Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts. PLoS Biol. 2011 Dec;9(12):e1001221. doi: 10.1371/journal.pbio.1001221. Epub 2011 Dec 20. |
2011 Dec | degradation | 13 | 4 | GH18, GH92 |
| PUL0465 | microarray, qPCR | mucin | Bacteroides thetaiotaomicron | <a href=https://pubmed.ncbi.nlm.nih.gov/18996345/>18996345</a> Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Cell Host Microbe. 2008 Nov 13;4(5):447-57. doi: 10.1016/j.chom.2008.09.007. |
2008 Nov 13 | degradation | 8 | 2 | GH18 |
| PUL0470 | microarray, qPCR | mucin | Bacteroides thetaiotaomicron | <a href=https://pubmed.ncbi.nlm.nih.gov/18996345/>18996345</a> Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Cell Host Microbe. 2008 Nov 13;4(5):447-57. doi: 10.1016/j.chom.2008.09.007. |
2008 Nov 13 | degradation | 7 | 1 | GH18 |
| PUL0471 | microarray, qPCR | mucin | Bacteroides thetaiotaomicron | <a href=https://pubmed.ncbi.nlm.nih.gov/18996345/>18996345</a> Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Cell Host Microbe. 2008 Nov 13;4(5):447-57. doi: 10.1016/j.chom.2008.09.007. |
2008 Nov 13 | degradation | 9 | 4 | CBM32, GH92 |
| PUL0472 | microarray, qPCR | mucin | Bacteroides thetaiotaomicron | <a href=https://pubmed.ncbi.nlm.nih.gov/18996345/>18996345</a> Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Cell Host Microbe. 2008 Nov 13;4(5):447-57. doi: 10.1016/j.chom.2008.09.007. |
2008 Nov 13 | degradation | 28 | 10 | CBM67, GH78, CE1, CE20, CE20, GH130_3, GH2, GH38, GH43_8, GH92 |
| PUL0576 | growth assay | mucin | Bifidobacterium bifidum | <a href=https://pubmed.ncbi.nlm.nih.gov/20974960/>20974960</a> Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging. Proc Natl Acad Sci U S A. 2010 Nov 9;107(45):19514-9. doi: 10.1073/pnas.1011100107. Epub 2010 Oct 25. |
2010 Nov 9 | degradation | 9 | 1 | GH112 |
| PUL0710 | RNA-seq, growth assay, liquid chromatography and mass spectrometry, gene mutant, mice colonization with mutant | mucin | Akkermansia muciniphila ATCC BAA-835 | <a href=https://pubmed.ncbi.nlm.nih.gov/37337046/>37337046</a> A genetic system for Akkermansia muciniphila reveals a role for mucin foraging in gut colonization and host sterol biosynthesis gene expression. Nat Microbiol. 2023 Aug;8(8):1450-1467. doi: 10.1038/s41564-023-01407-w. Epub 2023 Jun 19. |
2023 Aug | degradation | 8 | 0 | NA |
| PUL0711 | RNA-seq, growth assay, liquid chromatography and mass spectrometry, gene mutant, mice colonization with mutant | mucin | Akkermansia muciniphila ATCC BAA-835 | <a href=https://pubmed.ncbi.nlm.nih.gov/37337046/>37337046</a> A genetic system for Akkermansia muciniphila reveals a role for mucin foraging in gut colonization and host sterol biosynthesis gene expression. Nat Microbiol. 2023 Aug;8(8):1450-1467. doi: 10.1038/s41564-023-01407-w. Epub 2023 Jun 19. |
2023 Aug | degradation | 5 | 0 | NA |
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