LOCUS       NC_012034               3972 bp    DNA     linear   CON 13-DEC-2024
DEFINITION  Caldicellulosiruptor bescii DSM 6725, complete sequence.
ACCESSION   NC_012034 REGION: 2873292..2877263
VERSION     NC_012034.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02598462
            Assembly: GCF_000022325.1
KEYWORDS    RefSeq.
SOURCE      Caldicellulosiruptor bescii DSM 6725
  ORGANISM  Caldicellulosiruptor bescii DSM 6725
            Bacteria; Bacillati; Bacillota; Bacillota incertae sedis;
            Caldicellulosiruptorales; Caldicellulosiruptoraceae;
            Caldicellulosiruptor.
REFERENCE   1  (bases 1 to 3972)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H.,
            Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Meincke,L., Brettin,T.,
            Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
            Ovchinnikova,G., Kataeva,I. and Adams,M.W.W.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Complete sequence of chromosome of Caldicellulosiruptor becscii DSM
            6725
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3972)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H.,
            Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Meincke,L., Brettin,T.,
            Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
            Ovchinnikova,G., Kataeva,I. and Adams,M.W.W.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2009) US DOE Joint Genome Institute, 2800
            Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CP001393.1.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 4084710
            Source DNA available from Michael Adams (adams@bmb.uga.edu)
            Bacteria available from DSMZ: DSM 6725
            Contacts: Michael Adams (adams@bmb.uga.edu)
                 David Bruce (microbe@cuba.jgi-psf.org)
            Annotation done by JGI-ORNL and JGI-PGF
            Finishing done by JGI-LANL
            Finished microbial genomes have been curated to close all gaps with
            greater than 98% coverage of at least two independent clones. Each
            base pair has a minimum q (quality) value of 30 and the total error
            rate is less than one per 50000.
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. it is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376)
            Meta information:
             Organism display name: Caldicelulosiruptor becscii Z-1320, DSM
            6725
             Culture Collection IDs: DSM 6725
             GOLD ID: Gi03121 http://genomesonline.org/GOLD_CARDS/Gi03121.html
             Sequencing Platforms: Sanger, 454
             Phenotypes: Thermoacidophile, Cellulose degrader
             Diseases: None
             Habitat: Fresh water, Hot spring
             Oxygen Requirement: Anaerobe
             Temperature Range: Thermophile
             Biotic Relationship: Free living
             Isolation: Hot spring on the Kamchatka peninsula in Russia.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000022325.1-RS_2024_12_13
            Annotation Date                   :: 12/13/2024 12:57:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,844
            CDSs (total)                      :: 2,783
            Genes (coding)                    :: 2,660
            CDSs (with protein)               :: 2,660
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 123
            CDSs (without protein)            :: 123
            Pseudo Genes (ambiguous residues) :: 0 of 123
            Pseudo Genes (frameshifted)       :: 71 of 123
            Pseudo Genes (incomplete)         :: 66 of 123
            Pseudo Genes (internal stop)      :: 36 of 123
            Pseudo Genes (multiple problems)  :: 46 of 123
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3972
                     /organism="Caldicellulosiruptor bescii DSM 6725"
                     /mol_type="genomic DNA"
                     /strain="DSM 6725"
                     /type_material="type strain of Caldicellulosiruptor
                     bescii"
                     /db_xref="taxon:521460"
                     /note="type strain of Caldicelulosiruptor becscii DSM
                     6725"
     gene            1..1887
                     /locus_tag="ATHE_RS13755"
                     /old_locus_tag="Athe_2722"
                     /db_xref="GeneID:31774077"
     CDS             1..1887
                     /locus_tag="ATHE_RS13755"
                     /old_locus_tag="Athe_2722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014042645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialate O-acetylesterase"
                     /protein_id="WP_015909018.1"
                     /db_xref="GeneID:31774077"
                     /translation="MSLRMPYLISDGMVLQRNKQINIWGWAEPCKMVTVNFLGKSYTA
                     VADHLGKWKVTLPPMDAGGPYFMEIKCQHHAVTIKDILIGDVWVCSGQSNMVLPMERV
                     IDLYPEELDDCNIPLIRQFTVPEKYNFKGPQEELEGGTWDVLSKETLLKFSAVGYFFA
                     KALYKKYNIPIGLIKSCVGGTPIEAWMSSDIVYKFLENPDELEKLKDDSYIEAVSKEE
                     EAKIKAWFDYLNANDTGLNSNPPFFDENCSTSDWKAITIPATWKEMGLDSTIGVVWFK
                     KEINIPSCMVGNPARLYLGTIVDSDFTYVNGKLVGSTSYRYPPRKYNIPAGLLKEGKN
                     TIVVRVISNDGNGEFVKGKEYKLFTEDCKIDLKGQWLCKVGVRSPEPLPQQTFWQYKP
                     TGLFNGMIAPLLNYSIKGIIWYQGESNTDRPEDYCNKLCNLVDDWRKKWGDSSLPFLY
                     VQLANFMEPKPQPCESNWARLREEQRRALLHLDNVGMAVAIDLGEWNDLHPSNKKDVG
                     ERLALLAQKVAYGEKDLVASGPLYKSMKIEGNKIILEFSEVGSGLIAKGDSILKHFAI
                     AEKDKRFIWANAIIEGNKVIVWNDSIKNPVYVRYAWADNPEGANLYNKEGLPASPFTT
                     EDEI"
     gene            1915..2712
                     /locus_tag="ATHE_RS13760"
                     /old_locus_tag="Athe_2723"
                     /db_xref="GeneID:31774078"
     CDS             1915..2712
                     /locus_tag="ATHE_RS13760"
                     /old_locus_tag="Athe_2723"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015909019.1"
                     /GO_function="GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /GO_process="GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="WP_015909019.1"
                     /db_xref="GeneID:31774078"
                     /translation="MKVSYLFPNGRSKALTVSYDDGQVYDRKLVSIFNEYGIKGTFFL
                     NSETLGKDIFIQPDEVVTLYKGHEVGIHAKTHPFLDSIPLEGIIEEIIEDRKFLEGMV
                     GYPVKGMSYPYGVYNEDVIKILPSLGIEYSRTVNSTYNFNMPENFIVWNPTCHHKQNL
                     LEITKRFLEIENKNQLQLLYVWGHSFEFERENNWDLIEEFCKMISKASSVWFATNIEI
                     VRYVKALKMLEFSVERDVVYNPSAISVWLLVNGNVVEVSGGQIVTLK"
     gene            2746..3972
                     /locus_tag="ATHE_RS13765"
                     /old_locus_tag="Athe_2724"
                     /db_xref="GeneID:31774079"
     CDS             2746..3972
                     /locus_tag="ATHE_RS13765"
                     /old_locus_tag="Athe_2724"
                     /EC_number="3.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015909020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endo-1,4-beta-xylanase"
                     /protein_id="WP_015909020.1"
                     /db_xref="GeneID:31774079"
                     /translation="MDRYNHRKSQMLLKITTADGKPLKNAEITVRQIKHKFLFGCAEF
                     SVVPFVNGEFSGDFKEKAEMAFEKFVDLFNFATLPFYWGRFEPVRGKPDTQRLKNAAK
                     FLKNAGFVLKGHPLCWHTVTADWLLELTNNQILEAQLMRIKREVSDFAGLIDMWDVIN
                     EVVIMPNFNKYDNGITRICKQFGRMGLVKMVFDAAREANPKAILLINDYIVSDAYEIL
                     IEALLDKGVKIDAIGIQSHMHQGFWGVEKTQEVLERFSRFGLPLHFTEVTLISGKLMP
                     PYIKDLNDYKPESWPSTVECEERQAMEATLFYKMLFAHPLVEAITWWNFIDTFAWLGA
                     PAGFITKDGRVKPIYNALYNLIKKEWWTGTQNLVTDQDGFVKVSGFMGEYEVSFKDKK
                     SKFTLDRTHEVAQIIL"
ORIGIN      
        1 atgtcgttaa gaatgcctta tttaattagc gacggtatgg tgcttcaaag aaacaaacaa
       61 ataaatatct ggggctgggc tgaaccatgc aagatggtaa cagtaaattt cctgggaaag
      121 tcatacacgg cagtagctga ccacttggga aaatggaaag ttactttgcc acccatggat
      181 gccggcggtc catactttat ggaaatcaaa tgccaacatc atgctgttac aatcaaagac
      241 attctcattg gagatgtgtg ggtatgctct ggacagtcta atatggtttt gccgatggag
      301 agagtcatcg atttatatcc tgaagagctt gatgactgca atattccgct tatcagacag
      361 tttacagtcc ccgaaaaata caattttaaa ggtcctcagg aagagttaga aggtggtact
      421 tgggatgttc tcagcaaaga aacacttctt aagttttctg ccgtaggata cttttttgca
      481 aaagcgctct ataaaaaata caatatacca attggattga ttaaatcatg tgttggtgga
      541 acaccaattg aggcgtggat gagcagtgat atagtataca aatttcttga gaatcccgat
      601 gaacttgaaa aactcaaaga tgacagttat atagaagctg tatccaaaga agaggaagct
      661 aaaataaaag cttggtttga ttatttaaat gcaaacgata ctggtcttaa tagcaatcct
      721 ccattttttg atgaaaattg ttctacatcg gactggaaag ctataaccat accagctaca
      781 tggaaagaga tggggcttga ttcaacaata ggtgttgtat ggttcaaaaa agaaataaac
      841 ataccttctt gcatggttgg aaacccagca aggttatatc ttgggacaat tgttgacagc
      901 gactttacat atgtcaacgg aaaacttgtt ggttcaactt catatcgata tccgccaaga
      961 aagtataata tacctgctgg tcttctaaaa gaaggaaaaa atacaattgt tgtaagagtt
     1021 ataagcaatg atggaaatgg tgagtttgta aaaggaaagg aatacaagtt gtttacagaa
     1081 gattgcaaga tagacctcaa aggtcagtgg ctgtgcaagg tgggtgttag aagcccagaa
     1141 cctttgccgc aacaaacttt ttggcagtac aaacctacag gtctttttaa tggaatgatt
     1201 gcaccactat taaattacag tataaaaggt ataatatggt atcaaggtga atccaataca
     1261 gacaggcctg aggattactg taataaactg tgtaatcttg ttgatgattg gagaaaaaaa
     1321 tggggtgata gcagtctacc ttttctatac gtacagcttg cgaactttat ggaaccaaaa
     1381 ccgcagcctt gtgagagcaa ctgggcaagg ttgagggaag aacaaagaag agcacttttg
     1441 catcttgaca atgtgggaat ggcagttgca attgaccttg gtgagtggaa cgaccttcat
     1501 ccatcgaaca aaaaagatgt gggtgaaaga cttgctttac ttgcacaaaa agttgcatac
     1561 ggtgaaaagg acttggttgc atccgggcct ttatacaagt ctatgaaaat tgaaggaaat
     1621 aaaattattt tggaattttc agaagtcgga agcggactta ttgcaaaagg tgatagtata
     1681 cttaaacatt ttgcaattgc tgaaaaagat aaaagattta tttgggcaaa tgctattatt
     1741 gaaggtaaca aagttattgt ttggaacgac agtattaaaa accctgttta cgtgcgatac
     1801 gcttgggctg acaatccaga aggcgcaaat ctttataaca aagaaggatt gcctgcatca
     1861 ccttttacaa ccgaagatga gatttaaaat tttttttaaa tggggtgatt atagatgaaa
     1921 gtaagctatc tgtttcctaa tggcaggtcc aaggctctta cagtaagcta tgatgacgga
     1981 caggtatatg acagaaaact tgtcagcata tttaacgaat acgggattaa aggaaccttc
     2041 tttttaaact ctgaaactct tggcaaagac atctttatcc aacctgatga agttgtaact
     2101 ctttataaag ggcatgaagt tggcatacat gcaaaaaccc atcctttttt agattctata
     2161 ccccttgaag gtataatcga agaaattatt gaggacagga aatttttaga aggtatggtt
     2221 ggatatcctg tcaaaggaat gtcatatcca tatggagttt ataatgaaga tgtgataaaa
     2281 attttaccat cacttggcat tgagtattca aggacagtaa attcaactta taacttcaac
     2341 atgccagaaa attttattgt ttggaatccc acatgccacc acaaacaaaa tctgctggaa
     2401 attacaaaaa gatttttgga aatagaaaac aaaaatcagc ttcagctttt gtatgtgtgg
     2461 ggacacagtt ttgaatttga acgagaaaac aactgggatt tgattgaaga gttctgcaag
     2521 atgatttcaa aagcaagttc tgtctggttt gcgacaaata ttgaaattgt aagatacgtc
     2581 aaggcattga aaatgcttga gttttctgta gaaagagatg ttgtttataa tccttcggct
     2641 atttcagtat ggcttttggt aaatggcaat gttgttgagg taagcggtgg tcagattgta
     2701 actcttaaat aattgagaaa aaacattttt tgggaggttt ttaaggtgga tagatacaat
     2761 catcgaaaaa gccagatgtt attgaaaatt accacagctg atggtaaacc cttgaaaaat
     2821 gctgaaatta cagttcgtca aatcaaacac aagtttttat ttggatgtgc agaattttca
     2881 gttgttcctt ttgtaaacgg tgagttttca ggtgacttta aagaaaaagc tgaaatggct
     2941 tttgaaaaat ttgttgacct tttcaacttt gccactcttc ctttttactg gggcaggttc
     3001 gaacctgtca gaggaaaacc agatactcag cgactcaaaa acgctgccaa gttccttaaa
     3061 aatgctggat ttgttctcaa aggtcatcca ctttgctggc acacagttac tgctgactgg
     3121 cttttggaac ttactaacaa ccagatttta gaagcacagc ttatgcgtat aaaacgcgaa
     3181 gtaagcgatt ttgccggtct tatcgatatg tgggatgtaa taaatgaggt tgtcataatg
     3241 ccaaacttta ataaatacga taatggaatt acaagaattt gcaaacaatt tggcaggatg
     3301 ggtcttgtta aaatggtgtt tgacgcggca agagaagcta acccaaaagc tattttgcta
     3361 atcaacgact atattgtatc agatgcatat gaaatactga ttgaggcgtt gcttgacaaa
     3421 ggtgtgaaga ttgatgcaat aggaatacag tcgcacatgc accagggttt ctggggagtt
     3481 gagaagactc aagaggtgct tgaaaggttt tcacgttttg gtttgccact tcactttaca
     3541 gaagtcacat taatttcagg aaagcttatg cctccatata taaaagacct caacgactat
     3601 aaacctgaaa gttggccatc aaccgtagag tgtgaagaaa ggcaggcaat ggaagcaacg
     3661 ctgttttata aaatgctctt tgcgcatccg cttgttgaag caattacctg gtggaatttc
     3721 attgatactt ttgcttggct tggcgcacca gcaggattta ttacaaaaga cggaagggta
     3781 aaaccaattt ataatgctct ttataatctt attaaaaaag aatggtggac aggcacacaa
     3841 aaccttgtca cagaccagga tggttttgtg aaggtatcag gttttatggg cgaatatgaa
     3901 gtatctttta aagataaaaa atcaaaattt acacttgaca ggacacatga agttgctcag
     3961 ataattttat aa
//
