LOCUS       JABUUE010000008         6481 bp    DNA     linear   ENV 12-JAN-2022
DEFINITION  MAG: Bacteroidaceae bacterium isolate MAG57 scaffold8_size104757,
            whole genome shotgun sequence.
ACCESSION   JABUUE010000008 REGION: 60606..67086
VERSION     JABUUE010000008.1
DBLINK      BioProject: PRJNA563062
            BioSample: SAMN15049515
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG.
SOURCE      Bacteroidaceae bacterium (gut metagenome)
  ORGANISM  Bacteroidaceae bacterium
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae.
REFERENCE   1  (bases 1 to 6481)
  AUTHORS   Cabral,L., Persinoti,G.F., Paixao,D.A.A., Martins,M.P.,
            Chinaglia,M., Domingues,M.N., Morais,M.A.B., Sforca,M.L.,
            Pirolla,R.A.S., Generoso,W.C., Santos,C.A., Maciel,L.F. and
            Murakami,M.T.
  TITLE     Integrated multi-omics of capybara gut microbiome reveals
            unprecedented enzymatic strategies for hemicellulose breakdown
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6481)
  AUTHORS   Cabral,L., Persinoti,G.F., Paixao,D.A.A., Martins,M.P.,
            Chinaglia,M., Domingues,M.N., Morais,M.A.B., Sforca,M.L.,
            Pirolla,R.A.S., Generoso,W.C., Santos,C.A., Maciel,L.F. and
            Murakami,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JUN-2020) Brazilian Biorenewables National Laboratory
            (LNBR), Brazilian Center for Research in Energy and Materials
            (CNPEM), Rua Giuseppe Maximo Scolfaro 10000, Campinas, Sao Paulo
            13083-970, Brazil
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2019
            Assembly Method        :: IDBA_UD v. Version 1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 59.99x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 12/18/2020 19:11:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.0
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,097
            CDSs (total)                      :: 2,085
            Genes (coding)                    :: 2,071
            CDSs (with protein)               :: 2,071
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 4 of 14
            Pseudo Genes (frameshifted)       :: 5 of 14
            Pseudo Genes (incomplete)         :: 6 of 14
            Pseudo Genes (internal stop)      :: 1 of 14
            Pseudo Genes (multiple problems)  :: 2 of 14
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6481
                     /organism="Bacteroidaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="scaffold8_size104757"
                     /isolate="MAG57"
                     /isolation_source="Cecum and rectal contents from
                     Capybaras"
                     /host="Hydrochoerus hydrochaeris"
                     /db_xref="taxon:2212467"
                     /environmental_sample
                     /geo_loc_name="Brazil: Tatui"
                     /lat_lon="23.3391317 S 47.9608396 W"
                     /collection_date="2017-08"
                     /metagenome_source="gut metagenome"
                     /note="metagenomic"
     gene            complement(1..1944)
                     /locus_tag="HUK06_02115"
     CDS             complement(1..1944)
                     /locus_tag="HUK06_02115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007216476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 97 catalytic
                     domain-containing protein"
                     /protein_id="MCF0243542.1"
                     /translation="MKTKAFFSLLIALAATFTAKASETITSPNGNIQVEVSNNDGKVS
                     YSVSLNGTVFILPSNLGLKLNYIDLSEGLTMSNIEKKQINEQYSVPTIKKRNVNYTAN
                     AATIAFTKNGKKAIDIEFRVSDSDVAFRYYIHQPEKESRYAAVVKEEKTAFIIAEAAT
                     TYLCPQMKPMTGFAGTAPSYETHATMDAPMGNNGWGDGFVFPCLFKNADKGWMLISET
                     GTNGNYCGCHLQNISGNKYAIAFPNPNECNGNGTSEPGLSLPCYTPWRTITLGATPQT
                     LVETTVATDLVEPQYEASKKFTYGRGTWSWIIKMDPSCNYDEQVRYIDFAAAMGYESV
                     LIDALWDTQIGRDKMADLVKYAASKNVGIFLWYNSNGYWNHAPQGPFGVMHRATKRTS
                     EFRWLKKIGVRGMKIDFFGGDKQQQMQIYEDILSDANDAGLMVIFHGCTLPRGWERMY
                     PNFVASEAVRASENLHFSQGECDSEALYATMHPFCRNAVASMDWGGSTLNKFYGANND
                     KGSQRRTSDVFALAASVLFQSPVQHFAMAPNNLTDAPDWAIDFMKRVPTQWDEIKYIA
                     GEPGKYVILARKTGNRWIVCGINAQETPLTTTLTLDHLNTGDMVKVYSDNAALEGSVK
                     EMKVNKKKQFKVTIPKNGGLVIE"
     gene            complement(2021..4570)
                     /locus_tag="HUK06_02120"
     CDS             complement(2021..4570)
                     /locus_tag="HUK06_02120"
                     /inference="COORDINATES: protein motif:HMM:NF012551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endo-1,4-beta-xylanase"
                     /protein_id="MCF0243543.1"
                     /translation="MKKLVISSAITLCSLLTATNVNAQDNVKELDLWQDNTDASYVTY
                     ANSIRMGSNDYKVYTARYTEFNSVVKGDKNFSLYCGGERTWLGTKNGASYPSWTDFKG
                     ELHIYPYTKKSGCGFYGLLLSHGGKTFNPEDVAGSLEKTNSELTNCTVTLHNGATLAM
                     WTGVRGVRIAELNTEEGSIILGPAKKGSGNGSYYVLGLSGNDALLAGQIAPTGKDAAT
                     KVGIIKEGAGTYRITGNDNLITGAIRILEGKVMLNNDVETARTKKMAGAIGALGSTNP
                     GVYVFEGAAIGGTGHSASIIDLYGNMEPGDNGIGTLTMADFVTGKNVDLRLRPSSKLY
                     FEINSAEEYDKVIVEGNLNHWNIGQDFAPSDKTPIIYIQPSENNTLKVGDRLTLISAK
                     GKTAREDIKWNFRIQYPKSLTWEVEEIEENGTYSLVAEVKSLDYSGQGEVDVDDDKGD
                     DEGGDDDDDDDGFDETTDPTPLRTYAEALGKYIGVAAPCWSYDINNYSDANTKTIGKE
                     FNMVVSENGMKFENTEQSKNSFNYSLGDKAVNLGKYYNCVIRGHVFAWHKQNGSWITD
                     NDNKNSHNYSKQELLSILKNHIFKVAEHYKGKVTEWDVVNECLSDDQTAIRNNPDAYD
                     LRHSVWYDGIGEAFIDSAFVWAHQADPSLKLYLTDYGVEFKGIAKTEALYNLAKRLLK
                     NNIPLHGVGIQCHLDAGKVDAAALAKTVESYKTLGLECIITECDLGCDNTETGLEQQA
                     KDFAAITRVWLTHDNCPKFVIWGLKDSDSWRGNSPLLFRENLSKKPAYYSIHKALRRA
                     SQAAGIDNPIVNYPSKQTGSDKVYNLQGQRVATNYHGIIITNGKKISKMNK"
     gene            complement(4760..6481)
                     /locus_tag="HUK06_02125"
     CDS             complement(4760..6481)
                     /locus_tag="HUK06_02125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015532242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="MCF0243544.1"
                     /translation="MINITTFGKTLAFSLLFLGIATTGSAAQKKVPAATFTNFTYTGE
                     DDIYAKNPLKPNEFYSPILQGCYPDPSICRKGDDYYLVNSSFAMFPGVPIFHSTDLIN
                     WVQIGNVLDRTSQLDPTTCGISAGIYAPAIHYNKYNDTFYMITTEFCAPCGGNMVVKT
                     KDPRQGWSDPFNLHFGGIDPSLFFDDNGKAYLVHNDAPEKPLYGPNHRCIKIWEYDLE
                     KDQIIPGTDKVIVNGGTDIEKKPVWIEGPHIYKKNGTYYLMCAEGGTGDWHSEVIFKA
                     DNIYGPYEPWNNNPILTQRHFLHNADKLADWAGHADLVEGKDGKYYGVFLGIRPNSKG
                     NVNTGRETFMLPVDWSGTWPVFENGLVPLSIKQKMPKGVENKTGKDGFFPNGNFTYSE
                     DFKSENIDYRWVAMRGPKENFIKIAKEGGLQMTALDANITEVQPISALFHRQQHIKYT
                     AQTTLSYNTKAAQKAGLICYQNEACNYVLTVQTEGKEQVLVLEKTVRPQRQKDFKTEI
                     VAKEPIGKLKTPITLGVTTDGLNYQFSYTLNGEKKNIGGPLDAAVLSTNFAGGFTGAL
                     VGMGVFK"
ORIGIN      
        1 ttattctatg acaagtccgc catttttcgg aattgttacc ttaaactgct tctttttgtt
       61 gaccttcatt tccttgacac ttccctcaag tgcggcgttg tcagagtaaa ccttcaccat
      121 gtcgcctgta ttaaggtggt cgagtgtcag ggttgttgtc agtggtgttt cttgtgcgtt
      181 gatgccgcag acaatccatc ggttgcctgt cttgcgtgca aggatgacat atttgccagg
      241 ctcaccagcg atatacttta tctcatccca ttgtgttggc acgcgcttca tgaagtcgat
      301 agcccagtcg ggagcgtcgg tcagattgtt tggagccatc gcaaaatgct gtacaggact
      361 ttggaaaagt acggatgctg ccaaggcgaa aacgtcagat gtgcggcgtt ggctaccctt
      421 gtcgttattt gctccataga acttgttgag cgttgagccg ccccagtcca tgcttgccac
      481 agcgttgcga cagaaaggat gcattgttgc atagagcgcc tctgagtcac attccccttg
      541 tgagaaatgc agattttcgc ttgcgcgcac agcctctgac gcaacaaagt taggatacat
      601 tctctcccat ccgcgtggaa gggtgcagcc gtggaagata accataaggc ctgcgtcgtt
      661 agcgtcagag agaatatcct cgtatatctg catctgctgc tgcttgtcgc cgccgaagaa
      721 gtcaatcttc ataccgcgaa caccaatctt tttaagccaa cggaactcag atgtgcgctt
      781 ggtggcacgg tgcataacgc cgaaaggacc ttgtggggcg tggttccagt agccgttaga
      841 gttgtaccag aggaagatgc caacattctt tgaagctgcg tatttcacaa ggtcagccat
      901 cttgtcgcga cctatctgtg tgtcccacag agcatcaata agcactgact cgtagcccat
      961 agcggcggcg aaatcaatgt aacgcacctg ttcgtcatag ttacagcttg ggtccatctt
     1021 gataatccag ctccatgtgc cgcgaccgta agtgaacttc ttgcttgcct cgtattgtgg
     1081 ctcaacaaga tctgtagcta ctgttgtctc taccaatgtc tgtggagtgg cgccaagcgt
     1141 gattgtgcgc caaggggtgt agcaagggag cgataggccg ggctctgatg tgccattgcc
     1201 attacattcg ttaggattag gaaaagcaat ggcatatttg tttcctgaga tattctgcag
     1261 gtggcatccg cagtagttgc cgttggtgcc agtctctgat ataagcatcc agcctttgtc
     1321 ggcattcttg aaaagacaag ggaagacaaa accgtcgccc catccgttgt tgcccatagg
     1381 agcgtccatc gtagcgtggg tctcgtaact tggggctgtt cctgcgaagc ctgtcatagg
     1441 cttcatctgt gggcagaggt atgttgttgc agcttcagcg atgataaagg ctgtcttttc
     1501 ctccttcaca acagcagcat agcgtgactc tttctcgggc tgatggatgt agtagcgaaa
     1561 agccacatcc gagtctgaca cgcggaactc aatgtcaata gccttcttgc cgttctttgt
     1621 gaaagcaatg gtggcagcat tggcagtgta gttcacgttg cgctttttga ttgttggcac
     1681 gctgtattgc tcgtttatct gtttcttttc aatgttagac atcgtaagac cctcgctcaa
     1741 atctatgtag ttgagcttca gtccgagatt agacggaagg atgaagactg tgccgttgag
     1801 tgatacagag tatgacactt tgccgtcgtt gtttgacact tctacttgga tgtttccgtt
     1861 aggagatgta attgtctctg atgccttagc tgtgaatgtc gcagcgaggg caatgagaag
     1921 ggagaaaaat gctttagttt tcattggtat gataagtgtg gggttatatg gtttaggggg
     1981 tattccggca ttccgttatt ccgttattcc ggcatttcaa ctatttgttc atcttgctta
     2041 ttttctttcc attggtaatt ataattccgt ggtagttagt ggctacgcgc tgtccttgta
     2101 ggttatatac cttgtcgcta ccagtctgct ttgaaggata gttgacgata gggttgtcta
     2161 ttcctgctgc ctgtgacgca cgtctcaacg ccttgtgtat tgagtaataa gcgggcttct
     2221 tgctgaggtt ttccctgaag agcagtggac tattgccgcg ccatgagtcg ctgtctttca
     2281 aaccccagat gacaaactta ggacagttgt catgcgtaag ccatacgcgg gtgatggcgg
     2341 caaaatcctt tgcttgttgt tctaagcctg tctctgtgtt gtcgcagcca aggtcacatt
     2401 ctgtaatgat acattccaaa ccaagtgtct tgtagctttc cacagtcttt gccaatgctg
     2461 cagcgtcaac ctttcctgca tccaaatggc actgaatacc tacgccgtgc aggggaatgt
     2521 tgtttttcag cagtcgcttt gcaaggttgt agagggcttc ggtcttggcg atgcccttga
     2581 actctacgcc atagtccgtg agatatagtt taagacttgg atcagcttga tgtgcccaaa
     2641 cgaaggctga atcaataaaa gcctcaccga tgccatcgta ccatactgag tggcgaaggt
     2701 cgtaagcgtc agggttgttg cggatggcgg tctggtcgtc gctgagacac tcgtttacaa
     2761 catcccattc cgtcactttt cccttgtaat gctcggcaac cttgaagatg tggtttttaa
     2821 ggatgctgag caattcttgt ttagaatagt tgtgcgagtt cttgttgtcg ttatccgtta
     2881 tccaagagcc gttttgtttg tgccatgcga acacatggcc gcggattacg cagttgtagt
     2941 atttcccgag gtttacagcc ttgtctccga gagaatagtt gaacgagttc tttgactgtt
     3001 ctgtgttctc gaacttcatg ccgttctcgg aaacaaccat gttaaactcc ttgccgatgg
     3061 tcttagtgtt tgcgtcactg tagttgttta tgtcgtagct ccagcaagga gcggcaactc
     3121 caatatactt tccgagggct tcggcgtatg tgcggagtgg ggtagggtcg gtggtctcgt
     3181 cgaagccgtc gtcgtcatca tcgtcgtctc cgccttcatc gtcacctttg tcgtcatcaa
     3241 catctacctc tccttgacca gagtagtcga gcgatttcac ttcggcaacg agtgagtatg
     3301 tgccgttttc ctctatctct tccacttccc atgtcaggga ctttgggtat tgtatgcgga
     3361 aattccattt tatgtcttcg cgtgcggtct tgcctttcgc ggagattagc gtcagtcggt
     3421 cgcctacttt cagtgtgttg ttttcagaag gctgaatgta aatgataggc gttttgtctg
     3481 atggagcaaa gtcctgaccg atgttccagt ggttaagatt tccttctacg ataaccttgt
     3541 cgtactcttc agcggagttt atctcaaagt acagctttga acttgggcga agacggaggt
     3601 caacgttctt gcccgtaaca aagtccgcca ttgtgagtgt gcctatgcca ttgtcgccag
     3661 gctccatgtt tccgtaaagg tctatgatgg aagcggaatg gcctgtgcca cctattgccg
     3721 cgccctcgaa cacataaaca cctgggtttg tgctgcctaa cgcaccgata gcgccagcca
     3781 ttttctttgt gcgtgctgtt tctacgtcgt tgttcagcat cacttttccc tcaagtattc
     3841 tgatggcacc ggtaataaga ttgtcgtttc ctgtgatgcg ataagtgcct gcaccttcct
     3901 ttatgatacc aacttttgtt gcagcgtctt tgcctgttgg cgctatctga ccagctaata
     3961 atgcgtcgtt gccagaaagt ccgagtacat agtatgaacc gttgccagag cctttcttcg
     4021 caggaccgag gataatactg ccttcttcag tgttaagctc cgctattctt actccgcgca
     4081 cgcctgtcca catggcaagt gtcgctccgt tgtgcaaggt aacagtgcag tttgtcagtt
     4141 cgctgttggt cttttccaat gagcctgcca catcctctgg gttgaatgtc tttccgccat
     4201 gactgagaag cagtccgtag aagccacaac cgcttttctt agtgtatgga tatatgtgta
     4261 gctcaccctt gaagtcagtc catgaagggt atgaggcacc gttcttcgtg ccaagccatg
     4321 ttcgctcgcc gccgcagtat agggagaagt tcttgtcacc tttaaccaca gaattaaact
     4381 cggtataacg ggcggtatat accttgtagt cgttggaacc catacggatg ctgttggcgt
     4441 aggtaacata gcttgcatcg gtattgtcct gccaaaggtc caattccttt acattatcct
     4501 gcgcattaac attagtggct gttaataacg agcatagtgt gatggctgat gagatgacga
     4561 gttttttcat attccttgaa ctccttgtaa ctccttgtaa ctaactcctt gaacaaaacc
     4621 aactgccggc cctcccaaga aggagagccg acagaataat ttatgttagc gctgtcacag
     4681 cggtaacaaa gaaaacaatt aaggatgaat ataacttttt cataactaaa gccgtgaaac
     4741 ggatgcaggt ttctggcttt tacttgaata ctcccattcc tacgagagca cctgtaaagc
     4801 cacctgcgaa gtttgtggag agaacagctg cgtcaagcgg tccaccaatg ttcttcttct
     4861 ctccgttgag agtgtaagag aactgatagt tgagaccatc tgttgttacc ccaagagtaa
     4921 taggtgtctt cagcttgcca ataggttctt ttgccacaat ctctgtcttg aaatctttct
     4981 ggcgctgtgg acgaacagtc ttctcgagta cgagaacctg ctcttttccc tcagtctgca
     5041 ctgtcagcac atagttgcaa gcttcgttct ggtagcagat aagacctgcc ttctgtgccg
     5101 cttttgtatt atatgataat gttgtttgtg ctgtgtattt gatgtgctgc tgacggtgga
     5161 agagggcaga gataggctgt acctcagtga tgttagcgtc gagggctgtc atttggagac
     5221 caccttcctt tgctatcttg atgaagttct cctttggtcc gcgcattgcc acccagcggt
     5281 agtcaatgtt ctcagacttg aagtcctcgc tgtaagtgaa gtttccgtta gggaagaagc
     5341 catccttgcc agttttgttc tctacgccct taggcatctt ctgcttgata gacagaggaa
     5401 caagaccgtt ctcgaataca ggccatgtgc cgctccagtc aacaggaagc atgaatgtct
     5461 cgcgaccagt gttcacattg ccctttgagt tcggacgaat gccgaggaat actccgtagt
     5521 attttccgtc cttgccctca acgaggtcag catgtccagc ccagtcagct aacttgtcag
     5581 cgttgtggag gaagtggcgc tgtgtgagga tagggttgtt gttccatggc tcgtatgggc
     5641 cataaatgtt gtctgccttg aagattacct ctgagtgcca gtcgcctgtg ccaccttctg
     5701 cacacatgag gtagtatgtg ccgttcttct tgtagatgtg tggaccctca atccatactg
     5761 gctttttctc aatgtcagta ccgccattca cgataacctt gtctgtacca gggataatct
     5821 ggtctttctc aaggtcatac tcccaaatct tgatgcaacg atggttagga ccataaagtg
     5881 gcttctcagg agcatcgttg tgaacgaggt aagccttgcc gttgtcatca aagaacaatg
     5941 atgggtcaat gccgccgaag tggaggttga aagggtcact ccaaccctga cgtgggtcct
     6001 ttgtctttac caccatatta ccgccgcaag gagcgcagaa ctcagtggta atcatataga
     6061 atgtgtcgtt gtacttgttg taatgaatgg ctggagcgta gatgccagct gaaataccgc
     6121 atgttgttgg gtcgagttgc gatgtgcggt caagcacatt acctatctgc acccaattga
     6181 tgaggtcggt ggagtggaag ataggcacac cagggaacat tgcgaaagat gagtttacga
     6241 ggtagtagtc gtcacctttg cgacagatgc ttgggtctgg gtagcaacct tgaagtattg
     6301 gtgagtagaa ctcgtttggc ttcagaggat tctttgcgta gatgtcatcc tcacctgtgt
     6361 atgtgaagtt tgtgaaggtt gctgcaggca ctttcttctg tgcagcagaa cctgttgttg
     6421 ctattcctaa gaatagaagt gagaatgcaa gagtcttccc gaatgttgtg atgttaatca
     6481 t
//
