LOCUS       NC_004567               3205 bp    DNA     linear   CON 09-NOV-2020
DEFINITION  Lactobacillus plantarum WCFS1, complete genome.
ACCESSION   NC_004567
VERSION     NC_004567.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3138345
            Assembly: GCF_000203855.3
KEYWORDS    RefSeq; complete genome.
SOURCE      Lactobacillus plantarum WCFS1
  ORGANISM  Lactobacillus plantarum WCFS1
            Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
            Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3205)
  AUTHORS   Siezen,R.J., Francke,C., Renckens,B., Boekhorst,J., Wels,M.,
            Kleerebezem,M. and van Hijum,S.A.
  TITLE     Complete resequencing and reannotation of the Lactobacillus
            plantarum WCFS1 genome
  JOURNAL   J Bacteriol 194 (1), 195-196 (2012)
   PUBMED   22156394
REFERENCE   2
  AUTHORS   Kleerebezem,M., Boekhorst,J., van Kranenburg,R., Molenaar,D.,
            Kuipers,O.P., Leer,R., Tarchini,R., Peters,S.A., Sandbrink,H.M.,
            Fiers,M.W., Stiekema,W., Lankhorst,R.M., Bron,P.A., Hoffer,S.M.,
            Groot,M.N., Kerkhoven,R., de Vries,M., Ursing,B., de Vos,W.M. and
            Siezen,R.J.
  TITLE     Complete genome sequence of Lactobacillus plantarum WCFS1
  JOURNAL   Proc Natl Acad Sci U S A 100 (4), 1990-1995 (2003)
   PUBMED   12566566
REFERENCE   3  (bases 1 to 3205)
  AUTHORS   Renckens,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JUN-2011) Centre for Molecular and Biomolecular
            Informatics, Radboud University Medical Centre, P.O. Box 9010,
            Nijmegen 6500 GL, THE NETHERLANDS
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/08/2020 17:05:56
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 4.13
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 3,153
            CDSs (total)                      :: 3,061
            Genes (coding)                    :: 3,014
            CDSs (with protein)               :: 3,014
            Genes (RNA)                       :: 92
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 28 of 47
            Pseudo Genes (incomplete)         :: 9 of 47
            Pseudo Genes (internal stop)      :: 14 of 47
            Pseudo Genes (multiple problems)  :: 4 of 47
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AL935263.2.
            On Mar 12, 2012 this sequence version replaced NC_004567.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3205
                     /organism="Lactobacillus plantarum WCFS1"
                     /mol_type="genomic DNA"
                     /strain="WCFS1"
                     /isolate="NCIMB8826"
                     /db_xref="taxon:220668"
     gene            complement(1..327)
                     /locus_tag="LP_RS12650"
                     /old_locus_tag="lp_3009"
     CDS             complement(1..327)
                     /locus_tag="LP_RS12650"
                     /old_locus_tag="lp_3009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003642267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q9CIF0|4.A.3.2.4"
                     /protein_id="WP_003642267.1"
                     /translation="MAEKIIMLACSAGMSTSLLVSKMEAAAKQDGVDYKIFATSAADID
                     HQLSQDPHPDVLLLGPQVRYMANDVKKKTDKAGIPMDIINMSDYGMMNGENVLQAAEKL
                     LGDR"
     gene            complement(351..1823)
                     /locus_tag="LP_RS12655"
                     /old_locus_tag="lp_3010"
     CDS             complement(351..1823)
                     /locus_tag="LP_RS12655"
                     /old_locus_tag="lp_3010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011102003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q72XQ0|4.A.3.2.8"
                     /protein_id="WP_011102003.1"
                     /translation="MENSSNGAVSNFINNKVLPPIMKFVNTKPVKALQDGMVYALPFII
                     IGSVFLILSNIPIPAVAAVIKASGWAAFFNQAYTVTFGVLSLWAAVGIAYVYVRNEGYE
                     PLPAGLTSMAVFLLLQTLNIANPLVAAMGKAGTGITNAAGNVVMSGSAVSQNIDKLPKV
                     LQNFVQAPVTGVVNITWLGGQGMIAAIIVGILVGWAYSAMIRKGWKITLPEQVPASVAN
                     QFTAMIPAGVILIVAMLIFAAFSAFGNTDMLQFIYKVLQTPLQGLSDSLGGALVIAFLV
                     PFFWFFGVHGGLIMGAITSGLLIPNTFDNASLYKAGKLTVAQGAHIVTNEFYNNFINLT
                     GSGITIGLVIFTLFAAKSVQFKTIGKVEFIPALFNINEPFLFGLPIVMNPFLAIPFFLT
                     PVIVALSTYLVIYFGIVPPLNGFAAPWTTPAIISGFLIGGWKMAIWQTITLVMSTAIYF
                     PFAKKYDAILTKEEGEKAAAEAAAGNAEIEKM"
     gene            complement(1823..3205)
                     /locus_tag="LP_RS12660"
                     /old_locus_tag="lp_3011"
     CDS             complement(1823..3205)
                     /locus_tag="LP_RS12660"
                     /old_locus_tag="lp_3011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015380877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GH1"
                     /protein_id="WP_011102004.1"
                     /translation="MDKERQMPKDFFWGNSVSSMQTEGAWDEDGKGRSVYDVRPATATT
                     SDWHDAIDEYHRYEEDLDLMKDLHLNMYRIQISWSRVVPDGDGEFNAAGIAFYDRLVDA
                     MLARGITPMICLYHFDMPLALAENENGFMSRHTVDAFVRFGEKMIAHFADRVKYWIVFN
                     EHNLYFTDEVFNISGYTKGDQSVNDLYRIFHHTMLAHARLDDFVHQNYDDVKIGGMLAY
                     TPVYPETAKPIDIMAARKSDEFLNNNLNDAYVHGHYSPEVLRYVEQQGIDYDLQPGDEA
                     IIGKMKADFLAFSYYRSTVINGDKIPVNAVPNRYLNYSFEANRFLQANEWGWAIDPLGF
                     RNLITKLYDQYEVPVFPIENGIGLREHWDGQHMIEDDERITYHEEHIKAMKDAMLIDGA
                     KVLGYLGWGLIDIPSSHADIEKRYGVVYVNRSNHDLKDLKRVPKKSYYWLQGVLAKNGD
                     EL"
ORIGIN
        1 ttatctgtcg ccgagtaact tttcagctgc ttgtaagaca ttttcaccat tcatcatgcc
       61 atagtcggac atattgatga tatccattgg aatcccagcc ttatcagtct tcttcttcac
      121 gtcattcgcc atgtagcgaa cttgtggtcc taataacaag acatcgggat gcggatcttg
      181 actcagttga tggtcaatat cagccgctga ggtggcaaag atcttgtaat caacaccatc
      241 ttgctttgcc gcagcttcca tcttagacac taatagtgag gttgacattc ccgcagaaca
      301 tgccaacata ataatttttt cagccataat tatttaattc ctttctataa ttacatcttt
      361 tcaatttcag cgttaccagc agcagcttcc gcagcggcct tttcgccttc ttccttcgtt
      421 aagatagcat cgtacttctt agcgaatggg aagtaaattg cagttgacat gaccaacgta
      481 attgtttgcc agatagccat cttccagcca ccaatcagga aaccagaaat gattgctggg
      541 gtcgtccacg gtgccgcgaa accattcaat ggtggcacaa tgccgaagta gatgaccaga
      601 taagtggata aggccacgat aactggtgtc aagaagaatg gaattgccaa gaatgggttc
      661 atcacgatcg gtaacccgaa caagaatggt tcgttaatgt tgaataatgc tggaataaat
      721 tcaactttac caatcgtctt aaattgcacg gacttagcag caaacaacgt aaagataaca
      781 agtccgatcg taatcccaga accagttaag ttaatgaagt tattgtagaa ttcattagtt
      841 acaatgtgag caccttgggc aacggtcaac ttacctgctt tatataatga agcattgtcg
      901 aacgtgttcg gaatcagtaa cccactagta atggcaccca tgatcaaccc accatggacc
      961 ccaaagaacc agaagaatgg cactaagaac gcaataacca gcgcaccacc gagtgaatcg
     1021 gataatcctt gaagcggtgt ttgaagaacc ttgtaaataa attgcaacat gtcagtatta
     1081 ccgaaagcac tgaaggccgc aaagattaac attgcaacaa tcaagatgac cccggcagga
     1141 atcatggcag taaattggtt ggcaacactg gctggtactt gttctggtag ggtaatcttc
     1201 caacctttac gaatcatagc ggagtaagcc caaccaacta agataccgac aataatggca
     1261 gcgatcatcc cctgaccacc tagccaggta atattaacaa ccccagtaac gggtgcttgc
     1321 acaaaatttt gtaggacctt tggtaattta tcgatattct gtgaaacggc gctacctgac
     1381 atcacgacat tcccagcagc attggtaatc ccagtaccgg ctttacccat cgcagctact
     1441 aatggattgg caatgttaag cgtttgcaaa agtaagaata cggccatgga agttaaccca
     1501 gcgggcagtg gttcataccc ttcgttacgc acatacacat aggcaatccc aacggccgcc
     1561 caaagtgaga gaaccccaaa cgttactgta taggcctggt taaagaacgc tgcccaacca
     1621 gaggccttaa taacagcagc cacagctgga attggaatat tagataagat caagaatacg
     1681 gacccaatga taataaatgg taaggcgtag accatcccgt cttgtaaggc tttaactggt
     1741 ttagtgttaa cgaacttcat tattggcggt aaaactttgt tgttaatgaa attgctaaca
     1801 gcaccattac tactattttc cattacaatt catctccatt ttttgctagg accccttgca
     1861 gccaataata tgacttcttg ggaacccgct ttaagtcttt tagatcatga ttactccggt
     1921 taacgtaaac aactccgtaa cgtttttcga tatctgcgtg tgaacttgga atatcaatca
     1981 agccccagcc gagataacct agtaccttag cgccgtcgat caacatggca tctttcatcg
     2041 ccttgatatg ttcttcatga taagtaatcc gctcatcatc ttcgatcata tgctggccat
     2101 cccagtgctc gcgtaaccca atcccatttt caatcgggaa cacgggtact tcgtactggt
     2161 catacaactt ggtaatcaag ttgcggaaac cgagtggatc aatcgcccag ccccattcat
     2221 tagcttgtaa aaaacggttg gcctcaaaag aataattgag ataacgattc ggaacggcat
     2281 taacgggtat tttatccccg ttgataaccg ttgaacgata ataactaaag gccaaaaaat
     2341 ccgctttcat tttgccaatg attgcttcat cacctggttg caaatcataa tcgatgccct
     2401 gttgttcaac gtaacgcagg acttctggtg aatagtgccc gtgcacgtaa gcgtcattca
     2461 agttgttgtt caaaaattcg tcactcttac gagccgccat aatatcaatt ggcttagctg
     2521 tttctggata aaccggggtg taagctaaca taccaccaat cttcacgtca tcgtagttct
     2581 gatgaacaaa gtcatctagg cgcgcgtgcg ctaacatagt atggtggaaa atccggtata
     2641 agtcgttaac actttgatca cccttggtgt accctgaaat gttgaagact tcgtcggtaa
     2701 agtataaatt atgttcattg aacacgatcc aatatttaac ccggtcagca aaatgggcaa
     2761 tcatcttttc accaaaacgg acgaacgcat caacggtgtg gcgcgacatg aacccgtttt
     2821 cattttcagc taaggctaac ggcatatcaa agtgatacag gcaaatcatc ggtgtaatcc
     2881 cccgtgccag catcgcatca accagccgat cataaaacgc aatcccagcg gcattaaact
     2941 caccatcacc atctggaact actcgtgacc atgaaatctg aattcgatac atattcaaat
     3001 gtaagtcctt catcaaatca agatcttcct cgtaacgatg atattcatca atggcatcat
     3061 gccaatccga agtggttgct gtcgcaggac gaacatcata aactgaacgg cccttaccgt
     3121 cttcatccca agcaccctca gtttgcatac ttgacactga attaccccag aaaaaatcct
     3181 tgggcatctg tcgctcctta tccat
//
