LOCUS       AL645882                4679 bp    DNA     linear   CON 06-FEB-2015
DEFINITION  Streptomyces coelicolor A3(2) complete genome.
ACCESSION   AL645882
VERSION     AL645882.2  GI:30407153
DBLINK      BioProject: PRJNA242
            BioSample: SAMEA1705940
KEYWORDS    complete genome.
SOURCE      Streptomyces coelicolor A3(2)
  ORGANISM  Streptomyces coelicolor A3(2)
            Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae;
            Streptomyces; Streptomyces albidoflavus group.
REFERENCE   1  (bases 1 to 4679)
  AUTHORS   Redenbach,M., Kieser,H.M., Denapaite,D., Eichner,A., Cullum,J.,
            Kinashi,H. and Hopwood,D.A.
  TITLE     A set of ordered cosmids and a detailed genetic and physical map for
            the 8 Mb Streptomyces coelicolor A3(2) chromosome
  JOURNAL   Mol. Microbiol. 21 (1), 77-96 (1996)
   PUBMED   8843436
REFERENCE   2  (bases 1 to 4679)
  AUTHORS   Bentley,S.D., Chater,K.F., Cerdeno-Tarraga,A.M., Challis,G.L.,
            Thomson,N.R., James,K.D., Harris,D.E., Quail,M.A., Kieser,H.,
            Harper,D., Bateman,A., Brown,S., Chandra,G., Chen,C.W., Collins,M.,
            Cronin,A., Fraser,A., Goble,A., Hidalgo,J., Hornsby,T., Howarth,S.,
            Huang,C.H., Kieser,T., Larke,L., Murphy,L., Oliver,K., O'Neil,S.,
            Rabbinowitsch,E., Rajandream,M.A., Rutherford,K., Rutter,S.,
            Seeger,K., Saunders,D., Sharp,S., Squares,R., Squares,S., Taylor,K.,
            Warren,T., Wietzorrek,A., Woodward,J., Barrell,B.G., Parkhill,J. and
            Hopwood,D.A.
  TITLE     Complete genome sequence of the model actinomycete Streptomyces
            coelicolor A3(2)
  JOURNAL   Nature 417 (6885), 141-147 (2002)
   PUBMED   12000953
REFERENCE   3  (bases 1 to 4679)
  AUTHORS   Bentley,S.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAY-2002) Submitted on behalf of the Streptomyces
            sequencing team, Sanger Institute, Wellcome Trust Genome Campus,
            Hinxton, Cambridge CB10 1SA E-mail: sdb@sanger.ac.uk
FEATURES             Location/Qualifiers
     source          1..4679
                     /organism="Streptomyces coelicolor A3(2)"
                     /mol_type="genomic DNA"
                     /serovar="A3(2)"
                     /db_xref="taxon:100226"
     gene            1..1278
                     /gene="SCO5232"
                     /gene_synonym="SC7E4.29"
     CDS             1..1278
                     /gene="SCO5232"
                     /gene_synonym="SC7E4.29"
                     /note="SC7E4.29, possible sugar transporter sugar binding
                     protein, len: 425 aa; similar to TR:Q9RK79 (EMBL:AL132662)
                     Streptomyces coelicolor putative sugar transporter sugar
                     binding protein SCF11.11, 422 aa; fasta scores: opt: 917
                     z-score: 991.5 E(): 0; 37.9% identity in 417 aa overlap and
                     to SW:MALX_STRPN (EMBL:L08611) Streptococcus pneumoniae
                     maltose/maltodextrin-binding protein precursor MalX, 423
                     aa; fasta scores: opt: 312 z-score: 340.7 E(): 1.7e-11;
                     22.9% identity in 428 aa overlap. Contains Pfam match to
                     entry PF01547 SBP_bacterial_1, Bacterial extracellular
                     solute-binding protein and correctly situated match to
                     Prosite entry PS00013 Prokaryotic membrane lipoprotein
                     lipid attachment site. Contains also possible N-terminal
                     region signal peptide sequence"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q8KN19|3.A.1.1.33"
                     /protein_id="CAB94617.1"
                     /db_xref="GI:8546898"
                     /db_xref="GOA:Q9K491"
                     /db_xref="InterPro:IPR006059"
                     /db_xref="UniProtKB/TrEMBL:Q9K491"
                     /translation="MKRKLIAAIGIAGMMVSIAACGGDSDDDGKKAGADGYAGETLTVW
                     VMDGSSPDDWQADLAKDFEAKTKAKVKFEIQKWNGIQQKLTTALSEENPPDVFEIGNTQ
                     TPAYAKTGGLADLSDLKGEIGTDWSESLNKSAVFDGKQYAAPWFVVNRVVVYNKKIWAD
                     AGIKELPKTRDEFYNDLKTIGEKTDAEPIYLPGQNWYHFVGLVIGEGGELVKKDGDKYV
                     SNLADPKVAAATETYKKFQALSKAPKDKDEATPQQGEIFAKGKTGSFIGMGWEGATAIA
                     TNPAIEKDLGYFTIPGPTADKPEGVFLGGSNLAVAAGSKKQDLAKEFLKLALSDKYEGG
                     LAKANGVIPNKEALQSNLKGNAAAEAAAPAAGTGDTTPLIPEWAAVENDPNPIKTYLTA
                     VMKGKSPADAAKQVEGEFNKRLAQQQ"
     misc_feature    31..63
                     /gene="SCO5232"
                     /gene_synonym="SC7E4.29"
                     /note="PS00013 Prokaryotic membrane lipoprotein lipid
                     attachment site"
     misc_feature    415..1047
                     /gene="SCO5232"
                     /gene_synonym="SC7E4.29"
                     /note="Pfam match to entry PF01547 SBP_bacterial_1,
                     Bacterial extracellular solute-binding protein, score
                     77.40, E-value 1e-20"
     gene            1367..2353
                     /gene="SCO5233"
                     /gene_synonym="SC7E4.30"
     CDS             1367..2353
                     /gene="SCO5233"
                     /gene_synonym="SC7E4.30"
                     /note="SC7E4.30, possible sugar transporter integral
                     membrane protein, len: 328 aa; similar to TR:Q9RK78
                     (EMBL:AL132662) Streptomyces coelicolor putative sugar
                     transporter integral membrane protein SCF11.12, 302 aa;
                     fasta scores: opt: 907 z-score: 1004.1 E(): 0; 46.6%
                     identity in 298 aa overlap. Contains Pfam match to entry
                     PF00528 BPD_transp, Binding-protein-dependent transport
                     systems inner membrane component and possible hydrophobic
                     membrane spanning regions"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q8KN18|3.A.1.1.33"
                     /protein_id="CAB94618.1"
                     /db_xref="GI:8546899"
                     /db_xref="GOA:Q9K490"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="UniProtKB/TrEMBL:Q9K490"
                     /translation="MTVQTERPPSGPSDVRKADGGGTGGTRARAASRAGALAPYLLLLP
                     AAAATVLLLGWPLVKDGLLSFQNLNMAQLIQHVTEWTGFDNYKEVLTGEDFWRVTVRSI
                     IFTAVNVVLTMVVGGLIGLLLARLGRVMRFVLMIGLVLAWAMPVVAATTVYQWLFAQRF
                     GVVNWVLDKLGWHSMADFSWTGSQFSTFFVVTVLIVWMSVPFVAINLYAATTTIPDELY
                     EAAALDGAGMWRSFTSVTLPFLRPFLYATTFLEVIWIFKAFVQVYTFNGGGPDRLTEIL
                     PVYAYIEGVGNQHYGMGAAIAVLTILILLGLTAYYLRIVLKQEEDEL"
     misc_feature    2003..2230
                     /gene="SCO5233"
                     /gene_synonym="SC7E4.30"
                     /note="Pfam match to entry PF00528 BPD_transp,
                     Binding-protein-dependent transport systems inner membrane
                     component, score 47.70, E-value 2.5e-10"
     regulatory      2337..2342
                     /regulatory_class="ribosome_binding_site"
                     /gene="SCO5233"
                     /gene_synonym="SC7E4.30"
     gene            2350..3180
                     /gene="SCO5234"
                     /gene_synonym="SC7E4.31"
     CDS             2350..3180
                     /gene="SCO5234"
                     /gene_synonym="SC7E4.31"
                     /note="SC7E4.31, possible sugar transporter integral
                     membrane protein, len: 276 aa; similar to TR:Q9RK77
                     (EMBL:AL132662;) Streptomyces coelicolor putative sugar
                     transporter integral membrane protein SCF11.13, 285 aa;
                     fasta scores: opt: 1027 z-score: 1227.9 E(): 0; 54.3%
                     identity in 278 aa overlap and to TR:Q9R9Q5 (EMBL:AF175299)
                     Rhizobium meliloti putative inner membrane permease ThuG,
                     276 aa; fasta scores: opt: 554 z-score: 666.6 E(): 1.2e-29;
                     33.8% identity in 266 aa overlap. Contains Pfam match to
                     entry PF00528 BPD_transp, Binding-protein-dependent
                     transport systems inner membrane component and match to
                     Prosite entry PS00402 Binding-protein-dependent transport
                     systems inner membrane comp sign. Contains also possible
                     hydrophobic membrane spanning regions"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q8KN17|3.A.1.1.33"
                     /protein_id="CAB94619.1"
                     /db_xref="GI:8546900"
                     /db_xref="GOA:Q9K489"
                     /db_xref="InterPro:IPR000515"
                     /db_xref="UniProtKB/TrEMBL:Q9K489"
                     /translation="MKRSLFGRVWPNVTAVVLFIGLVFPVYWMFATAFKPTGDIISENP
                     VWFPTDITFEHFKTATEADHFWTYVSNSLIVTVCAVVFSLVIALAGSFALARMRFKGRR
                     GFIVGFMLAQMAPWEVMVIAIYMIVRDASMLNSLVPLTLFYMMMILPFTILTLRGFVAA
                     VPKELEESAMVDGCTRAQAFRRVILPLLAPGLMSTSMFGFITAWNELPLVLVVNKEAES
                     QTLPLWLTSFQTVFGDNWGATMAASSLFAIPILILFVYLQRKAVSGLTAGAVKG"
     misc_feature    2827..3051
                     /gene="SCO5234"
                     /gene_synonym="SC7E4.31"
                     /note="Pfam match to entry PF00528 BPD_transp,
                     Binding-protein-dependent transport systems inner membrane
                     component, score 60.30, E-value 4.3e-14"
     misc_feature    2830..2916
                     /gene="SCO5234"
                     /gene_synonym="SC7E4.31"
                     /note="PS00402 Binding-protein-dependent transport systems
                     inner membrane comp sign."
     gene            3189..4679
                     /gene="SCO5235"
                     /gene_synonym="SC7E4.32"
     CDS             3189..4679
                     /gene="SCO5235"
                     /gene_synonym="SC7E4.32"
                     /note="SC7E4.32, possible sugar hydrolase, len: 496 aa;
                     similar to SW:HEXA_ALTSO (EMBL:D17399) Alteromonas sp.
                     beta-hexosaminidase A precursor (EC 3.2.1.52) Cht60, 598
                     aa; fasta scores: opt: 486 z-score: 525.0 E(): 9e-22; 34.4%
                     identity in 363 aa overlap and to TR O69862
                     (EMBL:AL023702;) Streptomyces coelicolor putative hydrolase
                     SC1C3.20c, 506 aa; fasta scores: opt: 1849 z-score: 1988.9
                     E(): 0; 60.6% identity in 498 aa overlap. Contains Pfam
                     match to entry PF00933 Glyco_hydro_3, Glycosyl hydrolase
                     family 3 N terminal domain"
                     /codon_start=1
                     /transl_table=11
                     /product="GH3"
                     /protein_id="CAB94620.1"
                     /db_xref="GI:8546901"
                     /db_xref="GOA:Q9K488"
                     /db_xref="InterPro:IPR001764"
                     /db_xref="InterPro:IPR017853"
                     /db_xref="UniProtKB/TrEMBL:Q9K488"
                     /translation="MTTLARATDTLTRDALAVLQPGFAGTTAPDWLLRRIGEGLASVAL
                     FGRNVTSPEQVAALTAQLRAEREDLLVAIDEEGGDVTRLEVRTGSSFPGNHALGAVDDV
                     GLTRAVAAELGRRLAAAGVNFNWAPSADVNSNPDNPVIGVRAFGSDTDLVARHTAAYIT
                     GMQSSGVATSAKHFPGHGDTGIDSHHAMPRIDVGADVLAERDLVPFRAAIAAGSRAVMS
                     AHILVPALDPELPATLSRRILTDLLRGELGYDGLIVTDGIEMKAIAGTYGIERGTVMAI
                     AAGADAICVGGGLHDEGTVRRLGDALVEAVRAGELPEERLADAAERVRSLSRWAAENRP
                     ADGASDTADGDVGLRAARRALRVTVAGEPAPLTEAPYVAAFTPVANIAVGDETPWGVAA
                     ELGRLLPGTETGSFHGADAGREALAAAGSRRIVAVVRDEHRHPWMAAALDVLLAARPDT
                     VVVEMGVPRAEPRGAVHLATHGAARVCGRAAAEAIAGV"
     misc_feature    3258..4130
                     /gene="SCO5235"
                     /gene_synonym="SC7E4.32"
                     /note="Pfam match to entry PF00933 Glyco_hydro_3, Glycosyl
                     hydrolase family 3 N terminal domain, score 194.60, E-value
                     1.5e-54"
ORIGIN
        1 gtgaagcgca agcttatagc cgcgatcggt atcgcgggca tgatggtctc gatcgccgcg
       61 tgcgggggcg acagcgacga cgacggcaag aaggccggcg ccgacggcta tgccggtgag
      121 acgctcaccg tgtgggtgat ggacggctcc tcgccggacg actggcaggc ggacctcgcc
      181 aaggacttcg aggcgaagac caaggccaag gtcaagttcg agatccagaa gtggaacggc
      241 atccagcaga agctgaccac cgctctctcc gaagagaacc cgcccgacgt cttcgagatc
      301 ggcaacacgc agacccccgc ctacgccaag accggcggcc tcgcggacct gagcgacctc
      361 aagggcgaga tcggcaccga ctggtccgag tccctcaaca agtccgccgt gttcgacggc
      421 aagcagtacg cggccccgtg gttcgtggtc aaccgcgtcg tcgtctacaa caagaagatc
      481 tgggcggacg cgggcatcaa ggaactgccc aagacccgcg acgagttcta caacgacctc
      541 aagacgatcg gcgagaagac cgacgccgag ccgatctacc tgcccggcca gaactggtac
      601 cacttcgtgg gcctggtcat cggcgagggc ggcgaactgg tcaagaagga cggcgacaag
      661 tacgtctcca acctggccga cccgaaggtc gccgccgcca ccgagaccta caagaagttc
      721 caggccctgt ccaaggcgcc caaggacaag gacgaggcca ccccgcagca gggtgagatc
      781 ttcgccaagg gaaagaccgg ctccttcatc ggcatgggct gggagggcgc caccgcgatc
      841 gccaccaacc cggcgatcga gaaggacctc ggctacttca ccatccccgg ccccacggcg
      901 gacaagcccg agggcgtctt cctcggcggc tccaacctgg ccgtcgccgc gggcagcaag
      961 aagcaggacc tcgccaagga gttcctgaag ctcgcgctct ccgacaagta cgagggcggg
     1021 ctggccaagg ccaacggcgt catcccgaac aaggaggcgc tgcagagcaa cctgaagggc
     1081 aacgccgccg ccgaggccgc cgcgccggcc gccggtaccg gtgacaccac gccgctgatc
     1141 ccggagtggg ccgccgtcga gaacgacccg aacccgatca agacgtacct gacggccgtc
     1201 atgaagggga agtccccggc cgacgccgcc aagcaggtcg agggcgagtt caacaagcgc
     1261 ctggcgcagc agcagtagca ccgggtgagc cggggcgggg gctgacacac gacggccccc
     1321 gccccggcgt cgaggtgaac aggtcgagaa gagagagacc ccgagcatga ccgtgcagac
     1381 cgaacggccg ccctcaggcc cgtcggacgt ccgcaaggcg gacggtgggg gaaccggcgg
     1441 gaccagagcg agagccgcgt cgcgcgccgg cgcgctggcc ccgtatctgc tgctgctgcc
     1501 cgccgccgcg gccaccgtgc tgctgctcgg ctggccgctg gtgaaggacg gcctgctgtc
     1561 cttccagaac ctcaacatgg cgcagctgat ccagcacgtc accgagtgga ccggcttcga
     1621 caactacaag gaggtcctca ccggcgagga cttctggcgc gtcaccgtcc gttccatcat
     1681 cttcacggcc gtcaacgtcg tcctcaccat ggtggtgggc ggtctgatcg gcctgctgct
     1741 cgcccgcctc ggcagggtga tgcggttcgt gctgatgatc ggcctggtcc tggcgtgggc
     1801 catgccggtg gtcgccgcga ccaccgtcta ccagtggctc ttcgcccagc gcttcggcgt
     1861 cgtcaactgg gtgctcgaca agctcggctg gcactccatg gccgacttca gctggaccgg
     1921 cagccagttc tcgaccttct tcgtcgtcac cgtgctgatc gtctggatgt ccgtcccgtt
     1981 cgtcgcgatc aacctgtacg cggcgaccac caccatcccc gacgagctgt acgaggccgc
     2041 cgccctcgac ggggccggca tgtggcgcag cttcacctcg gtcaccctgc cgttcctgcg
     2101 cccgttcctc tacgcgacga cgttcctcga agtcatctgg atcttcaagg cgttcgtcca
     2161 ggtctacacg ttcaacggcg gcggaccgga ccgtctcacc gagatcctgc ccgtctacgc
     2221 ctacatcgag ggcgtcggca accagcacta cggcatgggt gcggcgatcg cggtcctgac
     2281 catcctgatc ctgctcggcc tgaccgcgta ctacctcagg atcgtgctca agcaagagga
     2341 ggacgagctg tgaagcgctc gctcttcggc cgcgtgtggc ccaacgtcac ggccgtcgtc
     2401 ctgttcatcg gcctcgtctt ccccgtctac tggatgttcg ccacggcctt caagccgacc
     2461 ggggacatca tctcggagaa cccggtctgg ttcccgaccg acatcacctt cgagcacttc
     2521 aagaccgcga ccgaggccga ccacttctgg acgtacgtga gcaactcgct catcgtcacc
     2581 gtctgcgcgg tcgtcttctc gctggtcatc gcgctggccg gatccttcgc cctggcgcgc
     2641 atgcggttca agggccggcg cggcttcatc gtcggcttca tgctcgccca gatggcgccc
     2701 tgggaagtca tggtcatcgc gatctacatg atcgtgcgtg acgcgtcgat gctgaacagc
     2761 ctggtgccgc tcacgctctt ctacatgatg atgatcctgc ccttcaccat cctgacgctg
     2821 cgcggcttcg tcgccgccgt gccgaaggag ctggaggagt cggcgatggt cgacggctgc
     2881 acccgggccc aggccttccg ccgcgtcatc ctgccgctgc tcgccccggg cctgatgtcc
     2941 acctcgatgt tcggcttcat caccgcctgg aacgagctgc cactcgtcct ggtcgtcaac
     3001 aaggaggcgg agtcccagac cctgccgctg tggctgacca gcttccagac cgtcttcggc
     3061 gacaactggg gcgcgaccat ggccgcctcc tccctgttcg ccatcccgat cctgatcctc
     3121 ttcgtctacc tccagcgcaa ggccgtcagc ggcctgaccg ccggcgccgt gaagggatag
     3181 caccaccgat gacgaccctc gccagggcca ccgacaccct cacgcgcgac gcgctcgccg
     3241 tcctccagcc cggcttcgcc ggcaccaccg cccccgactg gctgctgcgc cggatcggcg
     3301 aagggctggc gtccgtcgcc ctgttcgggc gcaacgtcac ctcgcccgag caggtggccg
     3361 ccctgaccgc acagctgcgc gccgagcgcg aggacctgct ggtcgcgatc gacgaggagg
     3421 gtggcgacgt cacccggctc gaggtgcgca ccggttcctc cttccccggc aaccacgccc
     3481 tcggggcggt ggacgacgtc gggctcaccc gggcggtggc cgcggaactg ggccgccggc
     3541 tcgccgccgc gggcgtcaac ttcaactggg cgccctccgc cgacgtgaac tccaacccgg
     3601 acaacccggt gatcggggtg cgcgccttcg gctccgacac cgacctggtc gcccggcaca
     3661 ccgccgccta catcaccggg atgcagtcct cgggcgtggc cacctccgcc aagcacttcc
     3721 cgggccacgg cgacacgggc atcgactccc accacgccat gccgcgcatc gacgtgggcg
     3781 cggacgtgct ggccgaacgc gacctggtcc ccttccgcgc ggccatcgcc gccggcagcc
     3841 gcgcggtgat gagcgcccac atcctggtcc cggccctgga cccggagctc ccggcaacgt
     3901 tgtcccggcg catcctgacc gacctgctcc gcggcgagct gggttacgac gggctcatcg
     3961 tcaccgacgg catcgagatg aaggccatcg ccggcaccta cggcatcgaa cgcggcaccg
     4021 tcatggccat cgccgccggt gccgacgcga tctgcgtggg cggcggcctg cacgacgagg
     4081 gcaccgtacg gcggctgggc gacgcgctgg tcgaggccgt ccgcgcgggc gaactgcccg
     4141 aggagcgcct ggccgacgcg gccgaacgcg ttcggtccct gtcccgctgg gcggcggaga
     4201 accgtcccgc cgacggggct tcggacaccg cggacggcga cgtcggcctg cgtgcggccc
     4261 gccgtgcgct gcgcgtcacc gtcgcggggg agcccgcgcc gctcaccgag gcaccgtacg
     4321 tcgccgcgtt caccccggtg gcgaacatcg cggtcggcga cgagaccccg tggggcgtgg
     4381 cggccgagct gggccgtctg ctcccgggca cggagaccgg cagcttccac ggggccgacg
     4441 cgggccgcga ggcgctggcc gcggcgggct cccggcgcat cgtcgccgtc gtccgcgacg
     4501 agcaccgcca cccctggatg gcggcggccc tcgacgtcct gctcgcggcc cgccccgaca
     4561 cggtcgtcgt cgagatgggc gtcccgcgtg cggagccccg cggcgccgtc cacctcgcca
     4621 cccacggcgc ggcccgcgtc tgcggccgag cggcggcgga ggccatcgcg ggcgtctga
//
